PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.09G034900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C3H
Protein Properties Length: 295aa    MW: 30560.7 Da    PI: 9.7398
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.09G034900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.51.7e-063659225
                         -S---SGGGGTS--TTTTT-SS-S CS
              zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                         k ++C  f+ t  C++G++C+F H
  Manes.09G034900.1.p 36 KSKPCTKFFSTAGCPFGESCHFLH 59
                         7789******************** PP
2zf-CCCH21.25e-07102126327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                           + C+ +     Ck+Gd+C+FaHg+
  Manes.09G034900.1.p 102 SRMCNKYNSAEGCKFGDKCHFAHGE 126
                          567888888889***********96 PP
3zf-CCCH31.82.4e-10261285126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          +kt++C +f++ G C++G rC+FaHg
  Manes.09G034900.1.p 261 FKTKICENFSK-GSCSFGQRCHFAHG 285
                          69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.913461IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.7093462IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-63560IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-83659IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-43659IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-1397130IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-898130IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.91599127IPR000571Zinc finger, CCCH-type
SMARTSM003560.41101126IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-4105126IPR000571Zinc finger, CCCH-type
SuperFamilySSF547914.68E-15158239IPR004088K Homology domain, type 1
SMARTSM003221.2E-12167237IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.104.6E-16167238IPR004088K Homology domain, type 1
PROSITE profilePS5008414.676168232IPR004088K Homology domain, type 1
PfamPF000131.6E-11170233IPR004088K Homology domain, type 1
CDDcd001052.10E-14170232No hitNo description
Gene3DG3DSA:4.10.1000.107.8E-15258291IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-8260290IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.713260287IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-6260286IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-7261285IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MDLRKRGRPE AGFNANGGFK KSKHEMDSLS TGVGSKSKPC TKFFSTAGCP FGESCHFLHY  60
VPGGYNAVAQ MMNLGPAVTP VSRNMAAAPA VSNGSAPPAV KSRMCNKYNS AEGCKFGDKC  120
HFAHGEWELG RPIAPSHEDP RAIGALPGRM GGRMEPPSPG LAAGFGASAT AKISVEASLA  180
GAIIGKGGVN SKQICRQTGA KLSIREHETD PNLRNIEFEG SFEQIKQASA MVSDLIASVS  240
AANAPAKSIG VAGGGHAGSN FKTKICENFS KGSCSFGQRC HFAHGAAELR KSGM*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.09G034900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021623416.10.0zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-112C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A2C9V9030.0A0A2C9V903_MANES; Uncharacterized protein
STRINGcassava4.1_012954m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-64C3H family protein