PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.09G033400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | G2-like | ||||||||
Protein Properties | Length: 311aa MW: 35551.7 Da PI: 7.5475 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 85.8 | 4.3e-27 | 154 | 208 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++W++ LH++Fv++v++LGG+ekAtPk+il++m+ k Lt+ hvkSHLQ+ R+ Manes.09G033400.1.p 154 KKRIKWSQALHKKFVHCVNSLGGAEKATPKAILKMMESKELTIFHVKSHLQQARV 208 68*************************************************9886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.11E-12 | 152 | 208 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.1E-23 | 153 | 209 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.7E-19 | 154 | 209 | IPR006447 | Myb domain, plants |
Pfam | PF14379 | 1.6E-12 | 258 | 304 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MEGESLCQNL EAKLSSSVIA HHLDQLASVF YAADEDFIDF QREDECEIVA MNSSQVPEPG 60 DIVSESSLQT ILMKPYFCSN EHHRFYEKFR RCLSHDEHKK LLGENPNLIG TQVQVPSDEQ 120 NNSNLILSSP RDMEVASFTS SSSCASSVLS LPSKKRIKWS QALHKKFVHC VNSLGGAEKA 180 TPKAILKMME SKELTIFHVK SHLQQARVKS FDQIIFCALQ KYRSEKYMSE YKQDKPLLQG 240 KAESITSDIS ILCMKNNMKI NEALKLQLDV EKHLRQQLEI QRQLQQQIEE NARQLKMMMQ 300 QQQKINKSNL * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-16 | 154 | 211 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-16 | 154 | 211 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-16 | 154 | 211 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-16 | 154 | 211 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-16 | 154 | 211 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-16 | 154 | 211 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-16 | 154 | 211 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-16 | 154 | 211 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.09G033400.1.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021622518.1 | 0.0 | myb family transcription factor PHL5-like isoform X1 | ||||
TrEMBL | A0A2C9V7P5 | 0.0 | A0A2C9V7P5_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_004906m | 1e-172 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF26963 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06800.2 | 1e-28 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.09G033400.1.p |