PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.09G029400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 352aa    MW: 39793.4 Da    PI: 6.8147
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.09G029400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.5e-05274296123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C +CgksF  + + ++H +++
  Manes.09G029400.1.p 274 FMCRKCGKSFAVRGDWRTHEKNC 296
                          89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.48E-5185212No hitNo description
Gene3DG3DSA:3.30.160.607.2E-6190209IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.64190217IPR007087Zinc finger, C2H2
SMARTSM003550.58190212IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280192212IPR007087Zinc finger, C2H2
SuperFamilySSF576677.21E-7256294No hitNo description
Gene3DG3DSA:3.30.160.602.1E-6260294IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808274294IPR007087Zinc finger, C2H2
SMARTSM0035537274294IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MADPYSNFFT GWFKFNNNNP LHHQSPSLNP TPSTPPPQLS YTHHNLYTNP FTLNQNQTPS  60
PHYQNPPPSP PLREALPLLR LSPPRDHDKE QEQGDDEDQE QMSCTDKDRG MSLFSSSVNN  120
EDDDETVTVA LHIGLPSPSA AEMASVLSSS SEITDKDGDG DESVFPMSRL NKGQYWIPTP  180
TQILIGPTQF SCPVCCKTFN RYNNMQMHMW GHGSQYRKGP ESLRGTQPTG MLRLPCYCCA  240
PGCRNNIDHP RAKPLKDFRT LQTHYRRKHG IKPFMCRKCG KSFAVRGDWR THEKNCGKLW  300
YCICGSDFKH KRSLKDHIKA FGNGHAAYGI DGFEEEDEPA SEVEQDNESM Q*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.09G029400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021622314.10.0zinc finger protein WIP2
SwissprotQ9SVY11e-149ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A2C9V9J00.0A0A2C9V9J0_MANES; Uncharacterized protein
STRINGcassava4.1_010785m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-141C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]