PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.09G020700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family AP2
Protein Properties Length: 428aa    MW: 47250.6 Da    PI: 8.58
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.09G020700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.13.9e-1773132155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV++++++gr++A+++d  ++n+   k+ k+++lg ++ +e Aa+a++ a++k++g
  Manes.09G020700.1.p  73 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 132
                          57*******************766644468557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.58E-1773141IPR016177DNA-binding domain
PfamPF008476.5E-1373132IPR001471AP2/ERF domain
PROSITE profilePS5103220.12674140IPR001471AP2/ERF domain
SMARTSM003801.9E-2574146IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-1574141IPR001471AP2/ERF domain
PRINTSPR003674.3E-57586IPR001471AP2/ERF domain
PRINTSPR003674.3E-5122142IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MASSSSDPGL KPEVGSGSGS GGGSGGGESS EAVIANDQLL LYRGLKKPKK ERGCTAKERI  60
SKMPPCTAGK RSSIYRGVTR HRWTGRYEAH LWDKSTWNQN QNKKGKQVYL GAYDDEEAAA  120
RAYDLAALKY WGPGTLINFP VTDYTRDLEE MQNVSREEYL ASLRRKSSGF SRGISKYRGL  180
SSRWDSSFGR MPGSEYFSSI NYADDPAAEN EYVGSLCFER KIDLTSYIKW WGSNKTRQAD  240
SISKSSEETK CGYVEDIGEL KTSECAIQPT EPYQMPRLGM PVDGKKHKGS KISALSILSQ  300
SAAYKNLQEK ASKKQENNAD NDENENKNTN NMDYGKAVEK PTTHDGSNER LGAALGMSGG  360
LSLQRNVYQL TPFLSAPLLT NYNTVDPLVD PILWTSLVPV LPTGLPRNSE VTKTETSSTY  420
TFFRPEE*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.09G020700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021624429.10.0AP2-like ethylene-responsive transcription factor At2g41710
SwissprotQ8GWK21e-170AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A2C9V7230.0A0A2C9V723_MANES; Uncharacterized protein
STRINGcassava4.1_007488m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60072936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-151AP2 family protein