PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.09G019300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MIKC_MADS
Protein Properties Length: 256aa    MW: 29041.9 Da    PI: 5.8999
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.09G019300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.74.2e-30959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krien   rqvtfskRrng+lKKA+ELSvLCdaevavi+fsstgklye+ss
  Manes.09G019300.1.p  9 KRIENLNSRQVTFSKRRNGLLKKAKELSVLCDAEVAVIVFSSTGKLYEFSS 59
                         79***********************************************96 PP
2K-box64.24.7e-22901731699
                K-box  16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                          + + e++ Lk+e+++L+ +  +++G++L+ Lslk+Lq+Le+qL +++ ++++kK+++lleq++ ++ +e+++ +en++Lrk++e
  Manes.09G019300.1.p  90 TQSAEVRALKDEVSKLRLTCSQMMGQQLDGLSLKDLQHLEHQLSEGMLSVKDKKEKVLLEQLRISKLQEQMAIQENETLRKQVE 173
                          4578*****************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-43160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.487161IPR002100Transcription factor, MADS-box
CDDcd002651.44E-42272No hitNo description
SuperFamilySSF554554.97E-34286IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003199.5E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-303859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.08988178IPR002487Transcription factor, K-box
PfamPF014862.0E-1691172IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009910Biological Processnegative regulation of flower development
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MGRGKIEIKR IENLNSRQVT FSKRRNGLLK KAKELSVLCD AEVAVIVFSS TGKLYEFSST  60
SMENTLSRYN KGLEFECLEH SPDEFAIENT QSAEVRALKD EVSKLRLTCS QMMGQQLDGL  120
SLKDLQHLEH QLSEGMLSVK DKKEKVLLEQ LRISKLQEQM AIQENETLRK QVERLERSSS  180
LSKSEFLEFN PLERRLSVAR TTKTISYGLI ENEEEEEDLS ETSLQLGLSC NVNRKRKASK  240
IESMNNDSGS QVASE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-22169169MEF2C
5f28_B6e-22169169MEF2C
5f28_C6e-22169169MEF2C
5f28_D6e-22169169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Prevents premature flowering. Downstream regulator of a subset of the MIKC* MADS-controlled genes required during pollen maturation. {ECO:0000269|PubMed:17521410, ECO:0000269|PubMed:18034896, ECO:0000269|PubMed:18799658}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.09G019300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021622170.10.0agamous-like MADS-box protein AGL18
SwissprotQ9M2K82e-62AGL18_ARATH; Agamous-like MADS-box protein AGL18
TrEMBLA0A2C9V7580.0A0A2C9V758_MANES; Uncharacterized protein
STRINGcassava4.1_023071m1e-119(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35823260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.11e-60AGAMOUS-like 18