PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Manes.09G004500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 468aa MW: 51589.6 Da PI: 8.4531 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 31.6 | 3.5e-10 | 182 | 222 | 5 | 45 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le +L++ ++L Manes.09G004500.1.p 182 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 222 788*************************9777777666555 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.1E-7 | 171 | 225 | No hit | No description |
SMART | SM00338 | 2.1E-9 | 178 | 241 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.415 | 180 | 224 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14708 | 8.00E-22 | 182 | 234 | No hit | No description |
SuperFamily | SSF57959 | 7.5E-7 | 182 | 225 | No hit | No description |
Pfam | PF00170 | 2.8E-7 | 182 | 222 | IPR004827 | Basic-leucine zipper domain |
PROSITE pattern | PS00036 | 0 | 185 | 200 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 4.3E-32 | 264 | 339 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 468 aa Download sequence Send to blast |
MGTRTADVTG QNDNNALTEM PSFVPSIPNS NPMGTEGNSI RSRISSFGTL EQSLGFRIED 60 AVDLSRNPVF NQLKSSSQAI GTDVQFGTLN KSPAPSDVNL SSAVVRTQTL PLQKESQSNP 120 VTMLGSHREN WGETNVGDGS PRTDTSTDDT NDKNQRFERG QSTAVMASDS SDKSKEKTGD 180 QKTLRRLAQN REAARKSRLR KKAYVQQLES SRLKLTQLEQ ELQRARQQGI FISSSGDQSH 240 SMSGNGALAF DVEYARWLEE HNRQINELRA AVNSHAGDTE LRTIVDNVIA HFNDIFRLKG 300 VAAKADVFHI LSGMWKTPAE RCFMWIGGFR SSELLKLLVN QLEPLTEQQL MGIYNLQQSS 360 QQAEDALSQG MEALQQSLAE TLANGTPGSS GSSGNVANYM GQMAMAMGKL GTLEGFLRQA 420 DNLRQQTLEQ MHRVLTTRQS ARALLAINDY FSRLRALSSL WLARPRE* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Manes.09G004500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021622913.1 | 0.0 | transcription factor TGA2.3-like | ||||
Swissprot | O24160 | 0.0 | TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1 | ||||
TrEMBL | A0A2C9V6G7 | 0.0 | A0A2C9V6G7_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_008329m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1470 | 34 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06950.4 | 1e-143 | bZIP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Manes.09G004500.1.p |