PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.09G002200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | G2-like | ||||||||
Protein Properties | Length: 325aa MW: 34724.8 Da PI: 6.8819 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 96.6 | 1.9e-30 | 112 | 165 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl Manes.09G002200.1.p 112 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 165 59*******************.********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.059 | 109 | 168 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.23E-20 | 109 | 169 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-30 | 111 | 170 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.6E-24 | 113 | 165 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.3E-7 | 115 | 164 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MREDDSNWFS RWEEELPSPE ELMPISQTLI TPDLALAFDI RNPTSTATTN TTSLLQQNQP 60 PPPPAPPPPT ATTPSPNNPL QSSQPNSAEY AADSADLVSG AAGDEPARTL KRPRLVWTPQ 120 LHKRFVDAVA HLGIKNAVPK TIMQLMSVDG LTRENVASHL QKYRLYLKRM QGLSSGGAGG 180 VNGTGGGGGG GLAAGSDAAT EHLFASSPVP AHFLHPGRPN SDHFLPFVPV AALQHHHHQQ 240 QMAAAAAAVG HPQLQSQYHR QMGHFGQPPN GQFEHPFLAR QTQQPVHRMG APVHNTVPGY 300 MEDLESASGN GGRKVLTLFP TGDD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 5e-32 | 112 | 168 | 1 | 57 | Transcription factor LUX |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.09G002200.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021623739.1 | 0.0 | transcription factor MYBC1-like | ||||
Refseq | XP_021623740.1 | 0.0 | transcription factor MYBC1-like | ||||
Swissprot | O22210 | 5e-65 | MYBC1_ARATH; Transcription factor MYBC1 | ||||
TrEMBL | A0A2C9V6F0 | 0.0 | A0A2C9V6F0_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_029124m | 1e-167 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8542 | 30 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10760.1 | 5e-96 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.09G002200.1.p |
Publications ? help Back to Top | |||
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