PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.08G160800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRF
Protein Properties Length: 328aa    MW: 36385.3 Da    PI: 8.6942
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.08G160800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.56.3e-2565109145
                  WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                          d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+
  Manes.08G160800.1.p  65 DPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRKPVES 109
                          79****************************************986 PP
2QLQ64.33e-22339137
                  QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                         s+FT +Q+q+L++Q+l++Ky++a++PvPp+L+++iqk
  Manes.08G160800.1.p  3 SPFTVSQWQELEHQALIFKYMMAGLPVPPDLVLPIQK 39
                         89*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.1E-12339IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.7E-16438IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166624.498439IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.76265109IPR014977WRC domain
PfamPF088793.8E-2166108IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MRSPFTVSQW QELEHQALIF KYMMAGLPVP PDLVLPIQKS FESISHRFFH HPTVGYCSFY  60
GKKVDPEPGR CRRTDGKKWR CSKDAYPDSK YCERHMHRGR NRSRKPVESQ TMTQSSSTVT  120
SLTVTGSSSG TGSFQNLPLR TFGNLQGTGS GTNQSHYNMD SVPFGIPSKD YRYGQGLKSE  180
VGEHSFFSEA SGSNRGLQID SQLDSAWPLM QSRISSFPTS KSTDNSMLQN DYPQHSFFSG  240
GFATGELVKQ GGQSLRPFFD EWPKTRDSWS GFEDDRSNPT SFSTTRLSIS TPMASSDLST  300
PSSRSPHDNI DGMSRTDGSV AECPGKL*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.08G160800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819157e-72LN681915.1 Cucumis melo genomic scaffold, anchoredscaffold00070.
GenBankLN7132657e-72LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021619990.10.0growth-regulating factor 4-like
SwissprotQ6AWY49e-87GRF5_ORYSJ; Growth-regulating factor 5
TrEMBLA0A2C9VGQ90.0A0A2C9VGQ9_MANES; Uncharacterized protein
STRINGcassava4.1_011724m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47812951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.18e-46growth-regulating factor 5
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]