PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Manes.08G154100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 226aa MW: 24618.9 Da PI: 7.5362 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.6 | 5e-39 | 31 | 132 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C aCk+lrrkC ++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p ++r++a+ ++ yeA+ar++dPvyG+v++il+lqqq+++ Manes.08G154100.1.p 31 PCGACKFLRRKCISGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHIPVNRRHEAVVTISYEAQARLSDPVYGCVSTILALQQQVAS 120 7***********************9989************************************************************** PP DUF260 90 lkaelallkeel 101 l+aela+++++l Manes.08G154100.1.p 121 LQAELAMVQTQL 132 *******99885 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.744 | 30 | 132 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.4E-38 | 31 | 129 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:1900150 | Biological Process | regulation of defense response to fungus |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 226 aa Download sequence Send to blast |
MADPQCDTRR KAIGKRASAM QVETKSVAVA PCGACKFLRR KCISGCIFAP HFGSDQGAAR 60 FAAVHKVFGA SNVSKLLLHI PVNRRHEAVV TISYEAQARL SDPVYGCVST ILALQQQVAS 120 LQAELAMVQT QLINSRFIMA NVLQNSQQQQ HMAMLQPAYS NNSSASTNLI HMSSFTSNFD 180 LVTDTAPSSH SLDPLQLSRP SLDEEDEEQE SQIPGIFDGE GFHRR* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-37 | 24 | 133 | 4 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-37 | 24 | 133 | 4 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Manes.08G154100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021621221.1 | 1e-168 | LOB domain-containing protein 20-like | ||||
Swissprot | Q9SRV3 | 9e-83 | LBD20_ARATH; LOB domain-containing protein 20 | ||||
TrEMBL | A0A2C9VIZ1 | 1e-166 | A0A2C9VIZ1_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_028764m | 1e-167 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7715 | 31 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G03760.1 | 4e-69 | LOB domain-containing protein 20 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Manes.08G154100.1.p |