PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.08G151800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 380aa    MW: 41944 Da    PI: 7.8748
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.08G151800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding543.9e-17110155147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg W + Ed +l+++v+q+G+ +W++Ia+ ++ gR++k+c++rw++ 
  Manes.08G151800.1.p 110 RGHWRPAEDAKLKELVAQYGPQNWNLIAENLQ-GRSGKSCRLRWFNQ 155
                          899*****************************.***********996 PP
2Myb_DNA-binding54.52.8e-17163205246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           ++T+eE+++l+ a++++G++ W+ Iar ++ gRt++ +k++w+ 
  Manes.08G151800.1.p 163 RAFTEEEEDRLLAAHRLYGNK-WAIIARLFP-GRTDNAVKNHWHV 205
                          689******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.21105156IPR017930Myb domain
SMARTSM007171.1E-14109158IPR001005SANT/Myb domain
SuperFamilySSF466892.02E-28110203IPR009057Homeodomain-like
PfamPF002491.5E-16110155IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.8E-27111163IPR009057Homeodomain-like
CDDcd001679.63E-14113154No hitNo description
PROSITE profilePS5129427.198157211IPR017930Myb domain
SMARTSM007173.5E-15161209IPR001005SANT/Myb domain
PfamPF002491.2E-14163204IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-20164210IPR009057Homeodomain-like
CDDcd001676.00E-12164204No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MGEIVDLNFL PPPAASQLSL VNTFGVIGKP IETETINTHV GFQILRHSMD LNGNPWSIHQ  60
VENRGTKRPN DGSDGLFGVQ KKALSLNLDE EEEPNGSTPG KNGYTKLCAR GHWRPAEDAK  120
LKELVAQYGP QNWNLIAENL QGRSGKSCRL RWFNQLDPRI NKRAFTEEEE DRLLAAHRLY  180
GNKWAIIARL FPGRTDNAVK NHWHVIMARK HREQSSIYRR RKPSSSSKVV PPIKELDVNL  240
QTNACSESTT ISSTIDESAS TCTDLSLSPS STKPHPKLFT RFSLQGAPMD SSAEKEVMMR  300
NIAFDKFYSC SGGKELYQTG SMGVVRVMDQ CGQSDSNSEV SGTESVGTNR ISPSLFGDNE  360
DGNQKINSAF IDFLGVGAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-331102107107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.08G151800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021619781.10.0transcription factor MYB56
TrEMBLA0A2C9VGI00.0A0A2C9VGI0_MANES; Uncharacterized protein
STRINGcassava4.1_009525m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17800.12e-68myb domain protein 56