PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.08G149600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family G2-like
Protein Properties Length: 414aa    MW: 45893.8 Da    PI: 8.1736
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.08G149600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.91.1e-3347101155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          kprl+Wtp+LHerF+eav+qLGG++kAtPkt++++m+++gLtl+h+kSHLQkYRl
  Manes.08G149600.1.p  47 KPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKIMGIPGLTLYHLKSHLQKYRL 101
                          79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.90444104IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-3145102IPR009057Homeodomain-like
SuperFamilySSF466891.25E-1646102IPR009057Homeodomain-like
TIGRFAMsTIGR015573.1E-2347102IPR006447Myb domain, plants
PfamPF002491.4E-949100IPR001005SANT/Myb domain
PfamPF143792.0E-24148194IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MYHHHHQHRG KSVNSSSRMS IPPERYLFLQ GGNGPGDSGL VLSTDAKPRL KWTPDLHERF  60
IEAVNQLGGA DKATPKTVMK IMGIPGLTLY HLKSHLQKYR LSKNLHGQAI SGSSKIGATT  120
VESDRMSEAN VIHINNLSIG SQTNKSLHIG EALQMQIEVQ RRLHEQLEVQ RHLQLRIEAQ  180
GKYLQAVLEK AQETLGKQNL GTMGLEAAKV QLSELVSKVS TQCLNSAFSE LKELQSLCPQ  240
QIQTTPPTDC SMDSCLTSCE GSQKEQEIHN AGMGLRPYNG NTLLEAKEMV QDRLLRPTEL  300
KWDVHLKDNK MFLSPVGNNA EKSSNLLMRV GLQEENGNTS SSFTEGRFKG RSNDNNFADQ  360
TNKRTDSVKL HNGNISPGYG LPYFATKLDL NSHEEIDAAS SCKQLDLNGF SWN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-2146103158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-2146103158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-2147103157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-2147103157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-2147103157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-2147103157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-2146103158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-2146103158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-2146103158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-2146103158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-2146103158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-2146103158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.08G149600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4272082e-41AM427208.1 Vitis vinifera contig VV78X026806.9, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021619373.10.0myb-related protein 2-like
SwissprotQ9SQQ91e-151PHL9_ARATH; Myb-related protein 2
TrEMBLA0A2C9VHQ70.0A0A2C9VHQ7_MANES; Uncharacterized protein
STRINGcassava4.1_008636m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38523163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.31e-153G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]