PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.08G140300.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

G2-like

Protein Properties

Length: 455aa MW: 50231 Da PI: 5.0777

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.08G140300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	109.1	2.3e-34	223	277	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHe+Fveav++LGGse+AtPk +l+lm+v+gLt++hvkSHLQkYR+ Manes.08G140300.1.p 223 KPRMRWTPELHEAFVEAVNKLGGSERATPKGVLKLMNVEGLTIYHVKSHLQKYRT 277 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.566	220	280	IPR017930	Myb domain
SuperFamily	SSF46689	2.33E-18	221	277	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.9E-32	221	279	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.9E-25	223	277	IPR006447	Myb domain, plants
Pfam	PF00249	1.2E-10	225	276	IPR001005	SANT/Myb domain
Pfam	PF14379	5.1E-23	308	354	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence Send to blast
MSSSLPVLPT PLEDKYQKLP DSFQVASERQ LIRNPVPLQA SQLGPDSGTT AHLFSSSLRI 60 PKELNTSSVS PQNSPFIRSS KDRGTLLVAP TYSSHSEAQS TTLISNSEEN KDISWSVDPL 120 YDLLDFPGNV TTQNGQVESN IGVIASEDLS KRTDWQEWAD QLISVDSDLE PNWSELLNDA 180 NATDTEQQVL KSSPEFSVQP QIHLYNGEPC AVANPISTAP STKPRMRWTP ELHEAFVEAV 240 NKLGGSERAT PKGVLKLMNV EGLTIYHVKS HLQKYRTARY KPESSEGTSE KKLSPIEEMK 300 SLDLKTSMGI TEALRLQMEV QKRLHEQLEI QRNLQLRIEE QGRHLQMMFE KQRKLEDGKS 360 KVSSSSLDDP TLLQSDAVLP SGNDKSEISE PDHAKTVSDR NDCGVALEKN SPSVSRKHKA 420 LENGTGEDLL DESSPASTKR ARANETAISS TSCI*

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence Send to blast

MSSSLPVLPT PLEDKYQKLP DSFQVASERQ LIRNPVPLQA SQLGPDSGTT AHLFSSSLRI  60
PKELNTSSVS PQNSPFIRSS KDRGTLLVAP TYSSHSEAQS TTLISNSEEN KDISWSVDPL  120
YDLLDFPGNV TTQNGQVESN IGVIASEDLS KRTDWQEWAD QLISVDSDLE PNWSELLNDA  180
NATDTEQQVL KSSPEFSVQP QIHLYNGEPC AVANPISTAP STKPRMRWTP ELHEAFVEAV  240
NKLGGSERAT PKGVLKLMNV EGLTIYHVKS HLQKYRTARY KPESSEGTSE KKLSPIEEMK  300
SLDLKTSMGI TEALRLQMEV QKRLHEQLEI QRNLQLRIEE QGRHLQMMFE KQRKLEDGKS  360
KVSSSSLDDP TLLQSDAVLP SGNDKSEISE PDHAKTVSDR NDCGVALEKN SPSVSRKHKA  420
LENGTGEDLL DESSPASTKR ARANETAISS TSCI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-31	223	281	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-31	223	281	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-31	223	281	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-31	223	281	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-31	223	281	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-31	223	281	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-31	223	281	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-31	223	281	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269\|PubMed:20838596, ECO:0000269\|PubMed:23788639}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.08G140300.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not up-regulated by Pi starvation. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021621269.1	0.0	protein PHR1-LIKE 1-like
Refseq	XP_021621270.1	0.0	protein PHR1-LIKE 1-like
Swissprot	Q8GUN5	1e-111	PHL1_ARATH; Protein PHR1-LIKE 1
TrEMBL	A0A251KE80	0.0	A0A251KE80_MANES; Uncharacterized protein
STRING	cassava4.1_007430m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1512	34	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G29000.2	1e-113	G2-like family protein

Link Out ? help Back to Top
Phytozome	Manes.08G140300.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Bonnot C, et al. A chemical genetic strategy identify the PHOSTIN, a synthetic molecule that triggers phosphate starvation responses in Arabidopsis thaliana. New Phytol., 2016. 209(1): p. 161-76 [PMID:26243630] Aleksza D,Horváth GV,Sándor G,Szabados L Proline Accumulation Is Regulated by Transcription Factors Associated with Phosphate Starvation. Plant Physiol., 2017. 175(1): p. 555-567 [PMID:28765275]