PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.08G139000.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

MYB

Protein Properties

Length: 1018aa MW: 114640 Da PI: 5.0429

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.08G139000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43	1e-13	8	53	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l Manes.08G139000.1.p 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78***************************.**********986 PP
2	Myb_DNA-binding	32.7	1.7e-10	60	103	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l Manes.08G139000.1.p 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68***************99.****8..********9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	22.008	2	57	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.8E-18	5	56	IPR009057	Homeodomain-like
SMART	SM00717	7.0E-15	6	55	IPR001005	SANT/Myb domain
CDD	cd00167	6.48E-12	10	53	No hit	No description
Pfam	PF13921	4.4E-13	10	70	No hit	No description
SuperFamily	SSF46689	8.99E-21	33	106	IPR009057	Homeodomain-like
CDD	cd11659	1.80E-30	55	106	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.3E-14	57	104	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.443	58	107	IPR017930	Myb domain
SMART	SM00717	1.7E-12	58	105	IPR001005	SANT/Myb domain
Pfam	PF11831	1.1E-59	406	656	IPR021786	Pre-mRNA splicing factor component Cdc5p/Cef1

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1018 aa Download sequence Send to blast
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACVKD ENYEPGDDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR 180 LASLQKRREL KAAGIDTRQR KRKRKGIDYN AEIPFEKRPP PGFFDVTDED RPVEQPKFPT 240 TIEELEGKRR VDVEAQLRKQ DIAKNKIAQR QDAPSAILQA NKLNDPETVR KRSKLMLPAP 300 QISDHELEEI AKMGYASDLA GNEELTEGNG ATRALLANYA QTPQQGMTPL RTPQRTPAGK 360 GDAIMMEAEN LARLRESQTP LLGGENPELH PSDFSGVTPK KREIQTPNPM LTPSATPGGV 420 GLTPRIGMTP SRDGYSFGMT PKGTPIRDEL HINEDMDLHD SAKLEQRRQA DIRRNLRSGL 480 STLPQPKNEY QIVIQPPPED HEEPEEKIEE DMSDRIARER AEEEARQEAL LRKRSKVLQR 540 ELPRPPAASL ELIRNSLLRA DEDKSSFVPP TSIELADEMI RKELLLLLEH DNAKYPLDEK 600 QNKEKKKGAK QAANRSAMFV PVIEDFEEDE LKEADKLIEE EVQYICVAMG HESESVDVFV 660 DAHRTCLSDL MYFPTRNAYG LSSVAGNVEK LAALQNEFEN VKARLEAERE KALRLEKKVN 720 VLTQGYQTRS ERQLLPPIES ILKQMDTAGT ELECFQALQK QEQLAATHRI NGLWEEVQKQ 780 KELEQTLQRR FGNLVAELER IQHLIADYRT LAKQQEEIAA RNCALELAES AAKQAAMQNS 840 ETSEPMPSDD VGSSAPVDSS KLEISEQQIN AAQEHMHASL KQEGTNADSQ NKHAPMDTDA 900 SLSTDVPSVV EELHAARVPK ADENNKDGVP ANYLINQGDD ISDVVVVEGN KLKEESVNVN 960 ASDIKISTDV IRDDAVAEDQ QILMEITKPD GVVTKGGLGE DERSKSTYDE VNAVSSE*

Sequence ? help Back to Top

Protein Sequence Length: 1018 aa Download sequence Send to blast

MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACVKD ENYEPGDDPR  120
KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR  180
LASLQKRREL KAAGIDTRQR KRKRKGIDYN AEIPFEKRPP PGFFDVTDED RPVEQPKFPT  240
TIEELEGKRR VDVEAQLRKQ DIAKNKIAQR QDAPSAILQA NKLNDPETVR KRSKLMLPAP  300
QISDHELEEI AKMGYASDLA GNEELTEGNG ATRALLANYA QTPQQGMTPL RTPQRTPAGK  360
GDAIMMEAEN LARLRESQTP LLGGENPELH PSDFSGVTPK KREIQTPNPM LTPSATPGGV  420
GLTPRIGMTP SRDGYSFGMT PKGTPIRDEL HINEDMDLHD SAKLEQRRQA DIRRNLRSGL  480
STLPQPKNEY QIVIQPPPED HEEPEEKIEE DMSDRIARER AEEEARQEAL LRKRSKVLQR  540
ELPRPPAASL ELIRNSLLRA DEDKSSFVPP TSIELADEMI RKELLLLLEH DNAKYPLDEK  600
QNKEKKKGAK QAANRSAMFV PVIEDFEEDE LKEADKLIEE EVQYICVAMG HESESVDVFV  660
DAHRTCLSDL MYFPTRNAYG LSSVAGNVEK LAALQNEFEN VKARLEAERE KALRLEKKVN  720
VLTQGYQTRS ERQLLPPIES ILKQMDTAGT ELECFQALQK QEQLAATHRI NGLWEEVQKQ  780
KELEQTLQRR FGNLVAELER IQHLIADYRT LAKQQEEIAA RNCALELAES AAKQAAMQNS  840
ETSEPMPSDD VGSSAPVDSS KLEISEQQIN AAQEHMHASL KQEGTNADSQ NKHAPMDTDA  900
SLSTDVPSVV EELHAARVPK ADENNKDGVP ANYLINQGDD ISDVVVVEGN KLKEESVNVN  960
ASDIKISTDV IRDDAVAEDQ QILMEITKPD GVVTKGGLGE DERSKSTYDE VNAVSSE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5mqf_L	0.0	2	802	3	799	Cell division cycle 5-like protein
5xjc_L	0.0	2	802	3	799	Cell division cycle 5-like protein
5yzg_L	0.0	2	802	3	799	Cell division cycle 5-like protein
5z56_L	0.0	2	802	3	799	Cell division cycle 5-like protein
5z57_L	0.0	2	802	3	799	Cell division cycle 5-like protein
5z58_L	0.0	2	802	3	799	Cell division cycle 5-like protein
6ff4_L	0.0	2	802	3	799	Cell division cycle 5-like protein
6ff7_L	0.0	2	802	3	799	Cell division cycle 5-like protein
6icz_L	0.0	2	802	3	799	Cell division cycle 5-like protein
6id0_L	0.0	2	802	3	799	Cell division cycle 5-like protein
6id1_L	0.0	2	802	3	799	Cell division cycle 5-like protein
6qdv_O	0.0	2	802	3	799	Cell division cycle 5-like protein
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	185	204	KRRELKAAGIDTRQRKRKRK
2	199	204	RKRKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250\|UniProtKB:Q99459, ECO:0000269\|PubMed:17298883, ECO:0000269\|PubMed:17575050, ECO:0000269\|PubMed:8917598}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.08G139000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM034635	0.0	KM034635.1 Jatropha curcas clone JcMYB014 MYB family protein gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021620845.1	0.0	cell division cycle 5-like protein
Swissprot	P92948	0.0	CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBL	A0A2C9VG61	0.0	A0A2C9VG61_MANES; Uncharacterized protein
STRING	cassava4.1_000846m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4072	33	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09770.1	0.0	cell division cycle 5

Link Out ? help Back to Top
Phytozome	Manes.08G139000.1.p

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Li S, et al. MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis. Plant Cell, 2018. 30(2): p. 481-494 [PMID:29437988]