PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.08G108700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C3H
Protein Properties Length: 159aa    MW: 17251.5 Da    PI: 8.4655
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.08G108700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.76.1e-116283526
                         --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                          C++f ++G+C+yGd+Ck+ H+
  Manes.08G108700.1.p 62 VCNRFVKSGFCPYGDSCKYLHP 83
                         5********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.13E-13444No hitNo description
PfamPF062207.4E-8537IPR013085Zinc finger, U1-C type
PROSITE profilePS5010314.8025785IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-55984IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-76185IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-76283IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-86283IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MPLGKYYCDY CGKEFQDTPV ARKRHLQSSS HHRAKSLWYN SFKSTDPNQA YIDGGAGFAK  60
GVCNRFVKSG FCPYGDSCKY LHPTSSNNLQ TNGSLSQATG LMNNVQSPVI LGNQLVGGIS  120
LPGDMLRDSM GMPWGNLPPS LQPPPEGGYP PFPFVDWG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.08G108700.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021619842.11e-115zinc finger CCCH domain-containing protein 3 isoform X1
SwissprotQ0JP112e-47C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBLA0A2C9VFA41e-114A0A2C9VFA4_MANES; Uncharacterized protein
STRINGcassava4.1_018103m1e-114(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF119592833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.11e-36C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]