PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.08G107500.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

C2H2

Protein Properties

Length: 297aa MW: 34016.7 Da PI: 5.3873

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.08G107500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.00052	158	182	1	23
EEETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt..H 23 + C C+k ++ +++++H+++ H Manes.08G107500.1.p 158 FYCDLCNKQYKLAMEFEVHLSSydH 182 78*****************987555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00443	3.7E-17	61	106	IPR000467	G-patch domain
PROSITE profile	PS50174	16.511	63	108	IPR000467	G-patch domain
Pfam	PF01585	1.4E-15	64	104	IPR000467	G-patch domain
SuperFamily	SSF57667	8.2E-5	145	186	No hit	No description
Pfam	PF12171	5.1E-5	158	185	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	160	182	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MDNRWYNSEP ETDVQDKFEQ DKEQDSLVDD LVEDFRLPIN HKPTENVDLD NVEQASLDTK 60 LTASNVGFRL LQKMGWKGKG LGKDEQGIVE PIKSGIRDPK LGIGKQEEDD FFTSEENIQR 120 KKLEVEIEET EDHAKKREVL AEREQKIQTE VKEIKKVFYC DLCNKQYKLA MEFEVHLSSY 180 DHNHRKRFKE MREMHGSSSR DDRQKRELQR QEREMAKFAQ MADAHKQQQQ VEESGSGQVS 240 NSIRSATALA DQDQRKALKF GFSSKSGTSK KPSGGDAKKP KAAVASVFGN DSDEEQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.08G107500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021621267.1	0.0	G patch domain-containing protein 8-like isoform X3
Refseq	XP_021621268.1	0.0	G patch domain-containing protein 8-like isoform X3
TrEMBL	A0A2C9VHJ2	0.0	A0A2C9VHJ2_MANES; Uncharacterized protein
STRING	cassava4.1_012893m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5977	24	28

Link Out ? help Back to Top
Phytozome	Manes.08G107500.1.p