PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.08G102200.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | ARF | ||||||||
Protein Properties | Length: 759aa MW: 85036.2 Da PI: 6.4133 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 71.7 | 9.1e-23 | 128 | 229 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+ltpsd++++g +++ +++a+e+ +++++ ++l+ +d+ g++W +++i+r++++r++l++GW+ Fv+a++L +gD ++F Manes.08G102200.2.p 128 FCKTLTPSDTSTHGGFSVLRRHADEClppldmSLQPPA-QELVAKDLLGNKWHFRHIFRGQPRRHLLQSGWSLFVSAKKLVAGDAFIFL- 215 99*****************************9666665.59************************************************. PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 + +++e +v+v+r+ Manes.08G102200.2.p 216 -RGENGEIRVGVRRA 229 .4499999****996 PP | |||||||
2 | Auxin_resp | 117.4 | 1.2e-38 | 254 | 336 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+st+++F+v+Y+Pr+s++eF+++v+k+ +++k++++ GmRfkm+fe e+++e+rlsGtvvgv+++dp rWp SkWr+Lk Manes.08G102200.2.p 254 AWHAVSTGTMFTVYYKPRTSPAEFIIPVDKYDESVKSSFTTGMRFKMRFEAEEAPEQRLSGTVVGVEQADPKRWPASKWRCLK 336 89*******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.12E-38 | 121 | 257 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 9.0E-39 | 122 | 243 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.39E-21 | 126 | 228 | No hit | No description |
PROSITE profile | PS50863 | 11.533 | 128 | 230 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.2E-20 | 128 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-20 | 128 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 8.4E-36 | 254 | 336 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.3E-10 | 635 | 727 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 24.674 | 636 | 729 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 3.34E-11 | 637 | 713 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 759 aa Download sequence Send to blast |
MIIAGSSADN DCNGIAIADS GDALYRELWH ACAGPLVSVP RQGELVYYFP QGHIEQVQAS 60 TNQVADQQMP AYDLPAKILC RVVNVQLKAE LDTDEVFAQI TLLPQHEQDA KLVEEALPPP 120 TRPRVHSFCK TLTPSDTSTH GGFSVLRRHA DECLPPLDMS LQPPAQELVA KDLLGNKWHF 180 RHIFRGQPRR HLLQSGWSLF VSAKKLVAGD AFIFLRGENG EIRVGVRRAM RQPSNIPPSV 240 ISSHSMHIGI LATAWHAVST GTMFTVYYKP RTSPAEFIIP VDKYDESVKS SFTTGMRFKM 300 RFEAEEAPEQ RLSGTVVGVE QADPKRWPAS KWRCLKVRWD ETSPIHRPEK VSPWEIEPAS 360 APSLNSLPAC RIKRPRSNMA MHSADSAASI KKDNGLSRDL QDQENETLRS TFAVSKFQET 420 AQNPSRGSSL HVKDQNCTYF GKRRFEHESR NPQLGLGEKY LNAALGQQTP HDSGEFGQHL 480 VDLIPDTAGQ LKKHVVDEEN KLNWCSLSIM HSGPSLNMCE PILEPHTSKD KEICPTSWNL 540 KSTFLRQSDY VQGMEVDYQP GQRILSQGCA GNSPIATEKL HPLSLQLHEE DMGSNLSLQE 600 FKNPKCSESI IRCDEEKSFL ASDNFVLNKT QGGLTRRCVK VQKQGIGVGR SVDLTKFNNY 660 DEFLAELDQI FEFNGELVAP NKNWLVVFTD DEGDMMLVGD DPWQEFCSMV RRILIYTREE 720 INRMDPRSLN TIVEENSTVA DHIAVEDKSS KHLPTASV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-171 | 7 | 363 | 2 | 359 | Auxin response factor 1 |
4ldw_A | 1e-171 | 7 | 363 | 2 | 359 | Auxin response factor 1 |
4ldw_B | 1e-171 | 7 | 363 | 2 | 359 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Functions independently of ethylene and cytokinin response pathways. May act as a repressor of cell division and organ growth. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:15960614, ECO:0000269|PubMed:16176952, ECO:0000269|PubMed:16339187}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.08G102200.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021620831.1 | 0.0 | auxin response factor 2A-like | ||||
Swissprot | Q94JM3 | 0.0 | ARFB_ARATH; Auxin response factor 2 | ||||
TrEMBL | A0A2C9VF48 | 0.0 | A0A2C9VF48_MANES; Auxin response factor | ||||
STRING | cassava4.1_002216m | 0.0 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 0.0 | auxin response factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Manes.08G102200.2.p |