PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.08G101700.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family Trihelix
Protein Properties Length: 265aa    MW: 28834.3 Da    PI: 5.5118
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.08G101700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix90.32.1e-2843137186
             trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 
                          rWt+qe+l+Li++++  e+r+rrg+         + +p+W++vs++++++g++r+p+qC+++w+nl+++ykkike+e + ++e++s +++
  Manes.08G101700.2.p  43 RWTRQEILVLIQGKKVAENRVRRGRtagmafgsgQVEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDYKKIKEWETQIREETESFWVM 132
                          8**********************97778888888**********************************************9999999*99 PP

             trihelix  82 fdqle 86 
                           ++l+
  Manes.08G101700.2.p 133 RNDLR 137
                          99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.0E-543108IPR009057Homeodomain-like
PROSITE profilePS500906.443109IPR017877Myb-like domain
PfamPF138376.5E-1343133No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MVLVQPVTLS TNTVHGEPSN GVDNRPASID GGDDGSKAPR LPRWTRQEIL VLIQGKKVAE  60
NRVRRGRTAG MAFGSGQVEP KWASVSSYCK RHGVNRGPVQ CRKRWSNLAG DYKKIKEWET  120
QIREETESFW VMRNDLRRER KLPGFFDREV YDILDGVGGV SPATPGLSLA LAPSTEPAED  180
VETVFDSGRS AAAEDGLFSD FEQEEAGGSP DKEATAAKEV PPIKAAAVGV AAPVPISEQQ  240
YQPEPALQAD QTQGNMIVTR VRCF*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.08G101700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021621202.10.0trihelix transcription factor ASR3-like isoform X2
SwissprotQ8VZ202e-90ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBLA0A2C9VHD20.0A0A2C9VHD2_MANES; Uncharacterized protein
STRINGcassava4.1_010880m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.11e-92Trihelix family protein
Publications ? help Back to Top
  1. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]