PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.08G089700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 314aa    MW: 35226.3 Da    PI: 9.0779
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.08G089700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding316.1e-102873346
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                         +WT+eE +++ +a +++ ++   +W ++a++++ g+t  +++  ++ 
  Manes.08G089700.1.p 28 KWTPEENKQFENALALYDKDdpdRWQKVAAMIP-GKTVGDVIKQYRE 73
                         8********************************.******9999986 PP
2Myb_DNA-binding46.86.9e-15138182347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT+eE+ +++ + +++G+g+W+ I+r + ++Rt+ q+ s+ qky
  Manes.08G089700.1.p 138 PWTEEEHRQFLMGLQKYGKGDWRNISRNFVTTRTPTQVASHAQKY 182
                          8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-52274IPR009057Homeodomain-like
PROSITE profilePS5129310.0082479IPR017884SANT domain
SMARTSM007171.5E-112577IPR001005SANT/Myb domain
SuperFamilySSF466891.66E-112781IPR009057Homeodomain-like
CDDcd001674.69E-92874No hitNo description
PfamPF002498.6E-92873IPR001005SANT/Myb domain
PROSITE profilePS5129419.898131187IPR017930Myb domain
SuperFamilySSF466899.66E-18132187IPR009057Homeodomain-like
TIGRFAMsTIGR015573.8E-18134186IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.603.5E-13135181IPR009057Homeodomain-like
SMARTSM007173.9E-13135185IPR001005SANT/Myb domain
PfamPF002491.8E-12138182IPR001005SANT/Myb domain
CDDcd001674.51E-11138183No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MNRGIEILSP ASYLQNSNWL FQETKGTKWT PEENKQFENA LALYDKDDPD RWQKVAAMIP  60
GKTVGDVIKQ YRELEEDVSD IEAGLIPIPG YSTSDASFTL EWVNNNQPYD GFKHYYTPGG  120
KRTTVARSSE QERKKGVPWT EEEHRQFLMG LQKYGKGDWR NISRNFVTTR TPTQVASHAQ  180
KYFIRQSTGG KDKRRSSIHD ITTVNLPDTK SLSSDEKKSS PDHSSTSLQS QPQQKMAAMA  240
KGFVDHKPQN EGGGAAGVFS QANGNLLMAP FCGISSYGQK LQEQNLLGGT LPGYQFSPYN  300
LNLIFQMQPT QRQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-152694876RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00296DAPTransfer from AT2G38090Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.08G089700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2399560.0AF239956.1 Hevea brasiliensis unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021621236.10.0transcription factor DIVARICATA-like
SwissprotQ8S9H71e-106DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2C9VGA00.0A0A2C9VGA0_MANES; Uncharacterized protein
STRINGcassava4.1_012254m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-122MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]