PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.08G089000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRAS
Protein Properties Length: 750aa    MW: 85327.5 Da    PI: 7.4941
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.08G089000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS376.53.4e-1153767471374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          l++lL++cA+av+++d   a++lL++++ ++sp gd +qRla++f+  L++r+a+++s++yk l +++ts    ++ l+a++l+  ++P+
  Manes.08G089000.1.p 376 LRTLLINCAQAVAADDRLSANELLKQVRRHSSPFGDGNQRLAHCFADSLESRMAGTGSQIYKGLVSRRTS---AANILKAYHLYLAACPF 462
                          6789***************************************************************999...999************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                          lk+s+++ N++I +  ++++r+HiiDf+i +G+QWp+L+q L+ Rp+gpp++RiTg++ p++g   +e++eetg rLa +A++++vpfe+
  Manes.08G089000.1.p 463 LKLSNFVSNKTIKNLSANSKRLHIIDFGILYGFQWPTLIQRLSWRPGGPPNVRITGIDFPQPGfrPAERVEETGCRLATYAKKFNVPFEY 552
                          **************************************************************9*************************** PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                          n+ +ak++e+++leeL+++++E+++V + ++  +llde+v+++s++d vL+lv++++P+ ++++  +  +n++ F++rf eal ++s+lf
  Manes.08G089000.1.p 553 NA-IAKKWETIKLEELKIDREEVIIVTCFYRARNLLDETVAVDSQKDIVLNLVRKINPDFFIHAIINGAYNAPFFVTRFKEALFHFSSLF 641
                          **.7************************************************************************************** PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
                          d+l++ +pr+ +er+ +E+e++gre+ nvvaceg er+er et+++W+ r  +aGF +++++ +++k a   +rk + + + ++e+  +l
  Manes.08G089000.1.p 642 DMLDTIVPRDYQERMLIEKEIFGREALNVVACEGWERVERPETYKQWQVRTLRAGFVQLSFGREIVKCATDKVRKLYHKDFLIDEDGRWL 731
                          *****************************************************************************888********** PP

                 GRAS 359 vlgWkdrpLvsvSaWr 374
                          ++gWk+r ++s+S Wr
  Manes.08G089000.1.p 732 LQGWKGRIIYSLSIWR 747
                          ***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.334350727IPR005202Transcription factor GRAS
PfamPF035141.2E-112376747IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 750 aa     Download sequence    Send to blast
MIMDPRLRGF SSSLNGVQLG NRSLPVLSNQ SCVSGQKFEN SFVDHKSMEF PYLPTDPKPN  60
NVTPISNALH EEDSPEDCDF SDTVLRYISQ MLMEEDMEDK TCMLQGSLDL QAAEKSFYEV  120
LGKKYPPSPE PNHASTSQNS ENPYYSFTRN CNDDNNGVSH LDDTTCIQNL SYYNSFRPQT  180
LRVSTISQSS YSSSNSVITS IDGLVDSPSS IFQISDWSNE SQSISQFMKG VEEASKFLPN  240
GDDLFRNIEV NRFLSREPKV RISEVTVKEE RKDGGEYSPC GPRGRKSIHR EDADIEEGRS  300
SKQPAIYADS DMEPHVFDRL LLYSAGEGLK DLKDLCEALR NTAIKNDQNH NVQTKRSSGG  360
KVQRKKHNGK KDVVDLRTLL INCAQAVAAD DRLSANELLK QVRRHSSPFG DGNQRLAHCF  420
ADSLESRMAG TGSQIYKGLV SRRTSAANIL KAYHLYLAAC PFLKLSNFVS NKTIKNLSAN  480
SKRLHIIDFG ILYGFQWPTL IQRLSWRPGG PPNVRITGID FPQPGFRPAE RVEETGCRLA  540
TYAKKFNVPF EYNAIAKKWE TIKLEELKID REEVIIVTCF YRARNLLDET VAVDSQKDIV  600
LNLVRKINPD FFIHAIINGA YNAPFFVTRF KEALFHFSSL FDMLDTIVPR DYQERMLIEK  660
EIFGREALNV VACEGWERVE RPETYKQWQV RTLRAGFVQL SFGREIVKCA TDKVRKLYHK  720
DFLIDEDGRW LLQGWKGRII YSLSIWRPT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-4838274825380Protein SCARECROW
5b3h_A1e-4838274824379Protein SCARECROW
5b3h_D1e-4838274824379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.08G089000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021621677.10.0scarecrow-like protein 9
SwissprotO809330.0SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A251KC790.0A0A251KC79_MANES; Uncharacterized protein
STRINGcassava4.1_002308m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein