PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.08G085800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | HB-other | ||||||||
Protein Properties | Length: 248aa MW: 27495.7 Da PI: 6.8808 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 26.5 | 1.1e-08 | 77 | 114 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++g++ +qV++WF N + k Manes.08G085800.1.p 77 FEHflHPYPTDIDKQILAKQTGVSRSQVSNWFINAKEK 114 5544589***************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.7E-18 | 62 | 125 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 0.0034 | 69 | 122 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.15E-11 | 73 | 126 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 6.6E-16 | 75 | 111 | IPR008422 | Homeobox KN domain |
CDD | cd00086 | 2.06E-8 | 76 | 114 | No hit | No description |
PROSITE profile | PS50071 | 10.365 | 77 | 118 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MQTVVASFEC VAGLGNLEFT SKDRLSHGKE EATRFGNIDR GRFVEGSVQN FGFIEQQPVW 60 RPQRGLSERT VPRAWLFEHF LHPYPTDIDK QILAKQTGVS RSQVSNWFIN AKEKQDANKS 120 SHQLPLSNSI ASDNPSTSIQ RFQDILSYCT RNYLPDLPLG NEEQLNSSYN SMLSHPPLGV 180 CISAAGGSSS VSLTLALHQN NAIGLSEPFS MNATQRFGLR VESSEGFDMG SFEAQNRHFG 240 RDVIVKI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.08G085800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021651526.1 | 1e-117 | BEL1-like homeodomain protein 9 | ||||
TrEMBL | A0A2C9VEK3 | 0.0 | A0A2C9VEK3_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_003548m | 1e-109 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2810 | 33 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02030.1 | 1e-32 | TALE family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.08G085800.1.p |