PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.08G085700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | Trihelix | ||||||||
Protein Properties | Length: 246aa MW: 28177 Da PI: 10.2218 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 35.7 | 2.2e-11 | 12 | 98 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W++ + +Li+a e+ +lrrg+lk+++W+ev++ + ++ +++ +qCk++ + ++k+ k +k+ + + s++p+f++l+ Manes.08G085700.1.p 12 WSEGATAELIDAWGERYLKLRRGNLKQKHWKEVADIVssreDYKKATKTDIQCKNRNDTVKKKNKLEKAKIAAG--GGPSKWPFFKRLD 98 *************************************86555556678999***************99999987..67779******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 9.0E-22 | 10 | 100 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
LKINGGGRED YWSEGATAEL IDAWGERYLK LRRGNLKQKH WKEVADIVSS REDYKKATKT 60 DIQCKNRNDT VKKKNKLEKA KIAAGGGPSK WPFFKRLDQL IGPTAKSQDP FPTGIPVGIH 120 SGGASGSNQY QFHEGKAQMK SNQITKNFPD SEDSLPSKKK SREVVQREVN TKEFEQAKSM 180 KLQQVVEMEK TRMKFARELE LQRMQFFMKT QMEIRRGEND REENDKGEES NLLPHKVINF 240 SDQIL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.08G085700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021609286.1 | 1e-117 | trihelix transcription factor ASIL2-like | ||||
Swissprot | Q9LJG8 | 2e-49 | ASIL2_ARATH; Trihelix transcription factor ASIL2 | ||||
TrEMBL | A0A2C9VG57 | 0.0 | A0A2C9VG57_MANES; Uncharacterized protein (Fragment) | ||||
STRING | cassava4.1_021780m | 1e-158 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7919 | 30 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14180.1 | 2e-45 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Phytozome | Manes.08G085700.1.p |