PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.08G083200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 366aa    MW: 39652.4 Da    PI: 6.5084
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.08G083200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.34.6e-155297147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         + +W++eEd +l ++v + G ++W++Iar +  gR++k+c++rw + 
  Manes.08G083200.1.p 52 KVPWSPEEDAILSRLVSRTGARNWTLIARGIA-GRSGKSCRLRWCNQ 97
                         579*****************************.***********985 PP
2Myb_DNA-binding513.3e-16105147246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +++T eE+ +++ a++ +G++ W+ Iar ++ gRt++ +k++w++
  Manes.08G083200.1.p 105 KPFTDEEEHIIATAHAVHGNK-WAVIARLLP-GRTDNAIKNHWNS 147
                          68*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.90247102IPR017930Myb domain
SuperFamilySSF466892.2E-2849145IPR009057Homeodomain-like
SMARTSM007179.8E-1351100IPR001005SANT/Myb domain
CDDcd001671.02E-125496No hitNo description
Gene3DG3DSA:1.10.10.602.7E-2354104IPR009057Homeodomain-like
PfamPF139212.6E-1455112No hitNo description
PROSITE profilePS5129419.148103153IPR017930Myb domain
SMARTSM007172.3E-13103151IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-21105152IPR009057Homeodomain-like
CDDcd001673.17E-10106149No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MEIEMKEKTV VEVDGTNSGG GDVEDGAGSG DDLLHAVGEG GGSSRARRDR VKVPWSPEED  60
AILSRLVSRT GARNWTLIAR GIAGRSGKSC RLRWCNQLDP AVKHKPFTDE EEHIIATAHA  120
VHGNKWAVIA RLLPGRTDNA IKNHWNSSLR RRSTERGRTR LASGNVDQDA NLDKPKASSE  180
ETLSCGDANS FKSIEGKNVS SLDNLDDQCE EKAPLEIPSN NEAKESSTLF RPMARVSAFS  240
VHNPEIASPC PRPVPMQGPS IEAPIPDNGI CKLLDRIYNE RLVPHQCGHG CCKAQNGNNL  300
VNSLLGPEFV DFLDPPSFPN FELAAIATDI SNFAWLKSGL ENKTVPNDKA ARITPCGSQL  360
QMGHL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-36491524107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00337DAPTransfer from AT3G09230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.08G083200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021619570.10.0transcription factor MYB1
SwissprotQ425751e-98MYB1_ARATH; Transcription factor MYB1
TrEMBLA0A2C9VEI60.0A0A2C9VEI6_MANES; Uncharacterized protein
STRINGcassava4.1_023052m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39863362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09230.11e-95myb domain protein 1
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]
  3. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  4. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]