PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.08G071100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRAS
Protein Properties Length: 443aa    MW: 48075.4 Da    PI: 5.9375
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.08G071100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS379.15.4e-116794393374
                 GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                           lLl+cAe+v+ ++l  a+ lL ++sel+sp g++ +R+ ayf+ AL+ar+++s+ ++y+ l++++ + ++s++ ++a++ ++ +sP++k
  Manes.08G071100.1.p  79 GLLLQCAECVAMDNLDDATDLLPEISELSSPFGSSPERVGAYFAHALHARVVSSCLGTYSPLSSKSLTLTQSQKIFNAFQSYNSISPLIK 168
                          58**************************************************************************************** PP

                 GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                          fsh+taNqaI +a++ge+rvH+iD+di+qGlQWp L++ LasR+++  s+RiTg+gs    s+e le+tg+rLa+fA++lg+pfef+++ 
  Manes.08G071100.1.p 169 FSHFTANQAIFQALDGEDRVHVIDLDIMQGLQWPGLFHILASRTKKIRSMRITGFGS----SSELLESTGRRLADFASSLGLPFEFHPVE 254
                          *********************************************************....9**************************76 PP

                 GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
                           k  +  ++++L v+p+Ea++V++++  h l+d ++s       +L+l+  l+Pk+++ veq+++h ++sFl rf+eal+yysalfd+l 
  Manes.08G071100.1.p 255 GKIGNLTDVSQLGVRPREAVVVHWMH--HCLYDITGSDLG----TLRLLTLLRPKLITTVEQDLSH-GGSFLGRFVEALHYYSALFDALG 337
                          66667779****************99..777777777777....9*********************.789******************** PP

                 GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.eesgslvlg 361
                           +l+ +s er++vE++l+g ei+n+va  g +r+ + + +e+W + l+++GF+pv+l+ + a+qa+lll +++++gy++  ee+g+l lg
  Manes.08G071100.1.p 338 DGLGGDSVERHTVEQQLFGYEIRNIVAVGGPKRTGEVK-VERWGDELRRVGFQPVSLGGNPAAQASLLLGMFPWKGYTLVeEENGCLKLG 426
                          ********************************998887.9*************************************97637799999** PP

                 GRAS 362 WkdrpLvsvSaWr 374
                          Wkd  L+++SaWr
  Manes.08G071100.1.p 427 WKDLCLLTASAWR 439
                          ************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.29351418IPR005202Transcription factor GRAS
PfamPF035141.9E-11379439IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MLQSLVPQSP INSSSKPNNS TSSMKTKRVD KELAGGDSSV GADDPSAKRP NFSSEATVSG  60
DKTTGDEDST ESTGLRLLGL LLQCAECVAM DNLDDATDLL PEISELSSPF GSSPERVGAY  120
FAHALHARVV SSCLGTYSPL SSKSLTLTQS QKIFNAFQSY NSISPLIKFS HFTANQAIFQ  180
ALDGEDRVHV IDLDIMQGLQ WPGLFHILAS RTKKIRSMRI TGFGSSSELL ESTGRRLADF  240
ASSLGLPFEF HPVEGKIGNL TDVSQLGVRP REAVVVHWMH HCLYDITGSD LGTLRLLTLL  300
RPKLITTVEQ DLSHGGSFLG RFVEALHYYS ALFDALGDGL GGDSVERHTV EQQLFGYEIR  360
NIVAVGGPKR TGEVKVERWG DELRRVGFQP VSLGGNPAAQ ASLLLGMFPW KGYTLVEEEN  420
GCLKLGWKDL CLLTASAWRP LD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-1648344024379Protein SCARECROW
5b3h_D1e-1648344024379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.08G071100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021619159.10.0scarecrow-like protein 23
SwissprotQ9FHZ10.0SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A2C9VEA80.0A0A2C9VEA8_MANES; Uncharacterized protein
STRINGcassava4.1_007780m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-163GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]