PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.08G061000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 238aa    MW: 26679.4 Da    PI: 8.4907
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.08G061000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.69.5e-1367113354
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          ++h+e+E+rRR+riNs +++Lr llP +      K +Ka+ L k+v+ +++L
  Manes.08G061000.1.p  67 KNHKEAEKRRRERINSHLDKLRNLLPCN-----SKTDKASLLAKVVQRVREL 113
                          58*************************8.....7************998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.56164113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-1067113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.55E-1267116No hitNo description
Gene3DG3DSA:4.10.280.101.9E-1368119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.33E-1468122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-1170119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2602.4E-4151215No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MQPDNSPENS HLYRFLAENG VFNVGPYGFP AMQSLCSSSS SSYHNYPLEG SVITDMTPQD  60
RALAALKNHK EAEKRRRERI NSHLDKLRNL LPCNSKTDKA SLLAKVVQRV RELKQQTSQI  120
PGLETFPSET DEITVLSGEC SSDGQLIFKA SLCCEDRSDL LPDLIEILKS LHLKTLRAEM  180
VTIGGRIRNV LIVAAEKDHS IESVHFLQTA LKSLLERSNS SDRSKRRRVL DHKLIIQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224228KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.08G061000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021619934.11e-175transcription factor bHLH106
SwissprotO806742e-86BH106_ARATH; Transcription factor bHLH106
TrEMBLA0A2C9VDU71e-173A0A2C9VDU7_MANES; Uncharacterized protein
STRINGcassava4.1_015125m1e-174(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66723249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.14e-86bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]