PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.08G048200.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

C2H2

Protein Properties

Length: 295aa MW: 33075.3 Da PI: 5.5434

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.08G048200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.8	8e-05	217	239	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ Manes.08G048200.1.p 217 FMCRKCGKAFAVRGDWRTHEKNC 239 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	7.54E-7	201	237	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.3E-6	203	237	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	8.808	217	237	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MADPYSNFFT GWFKFSNNPL YHQYPSLNPT PATAAAQVSY SPHHLYTNPF NQTQAPYYNY 60 QNPPPSPPLR EALPLLRLSP ERDGERYQVQ EDDDEDQEQM SFMAVDVDKI NNNKAKVDHE 120 SFLSSSAAAG GDNEDDDTVT VALHIGLPSP SAAEMASVLS SSSEATDKDG DGDDSGFPFS 180 RLNKGCRNNI DHPRARPLKD FRTLQTHYRR KHGIKPFMCR KCGKAFAVRG DWRTHEKNCG 240 KLWYCICGSD FKHKRSLKDH IKAFGNGHAA YGIDGFEEDD EPASEVEQDN ESMQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.08G048200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021620589.1	0.0	zinc finger protein WIP2-like
TrEMBL	A0A2C9VDM8	0.0	A0A2C9VDM8_MANES; Uncharacterized protein
STRING	cassava4.1_010785m	1e-123	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF170	34	289

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-74	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Manes.08G048200.1.p