PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.08G046400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | C3H | ||||||||
Protein Properties | Length: 271aa MW: 28186.1 Da PI: 9.0239 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.7 | 1.5e-06 | 11 | 34 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C f+ t C++G++C+F H Manes.08G046400.1.p 11 KSKPCTKFFSTAGCPFGESCHFLH 34 7789******************** PP | |||||||
2 | zf-CCCH | 27 | 7.8e-09 | 76 | 101 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 k +lC+ + Ck+Gd+C+FaHg+ Manes.08G046400.1.p 76 KSRLCNKYNTAEGCKFGDKCHFAHGE 101 679*********************96 PP | |||||||
3 | zf-CCCH | 27.7 | 4.7e-09 | 237 | 261 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+ C +f + G C +G rC+FaHg Manes.08G046400.1.p 237 YKTKMCENFTK-GSCTFGQRCHFAHG 261 9**********.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.709 | 9 | 37 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.91 | 9 | 36 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.28E-6 | 10 | 35 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-4 | 11 | 34 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.3E-8 | 11 | 34 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.4E-13 | 72 | 104 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.98E-8 | 73 | 105 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.112 | 74 | 102 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.8E-6 | 76 | 101 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.016 | 76 | 101 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 8.62E-15 | 133 | 214 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 9.6E-12 | 142 | 212 | IPR004087 | K Homology domain |
Gene3D | G3DSA:3.30.1370.10 | 7.0E-16 | 142 | 212 | IPR004088 | K Homology domain, type 1 |
PROSITE profile | PS50084 | 14.299 | 143 | 207 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 1.3E-10 | 145 | 209 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 1.16E-13 | 145 | 207 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 6.2E-16 | 232 | 267 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.26E-8 | 235 | 266 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.835 | 236 | 263 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.0E-5 | 236 | 262 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.0E-6 | 237 | 261 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MDSLSTGVGS KSKPCTKFFS TAGCPFGESC HFLHYVPGGY NAVAQMMNLP PAVTPVSRNM 60 AAPPAIPNGS APSAVKSRLC NKYNTAEGCK FGDKCHFAHG EWELGKLIAP SHEDPRAIGT 120 VPGRMGGRME PPPPGPAASF GASATAKISV EASLAGAIIG KGGVHSKQIC RQTGAKLSIR 180 EHETDPNLRN IEFEGSFEQI KQASSMVSEL IASLSSANAP GKTIGAPAGH AHPGSNYKTK 240 MCENFTKGSC TFGQRCHFAH GAAELRKSGM * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.08G046400.1.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021621392.1 | 0.0 | zinc finger CCCH domain-containing protein 14-like | ||||
Swissprot | Q7F8R0 | 1e-105 | C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | A0A2C9VFC9 | 0.0 | A0A2C9VFC9_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_013023m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1462 | 32 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 2e-62 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.08G046400.1.p |