PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.08G045400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family G2-like
Protein Properties Length: 420aa    MW: 47380.8 Da    PI: 6.6937
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.08G045400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like98.93.5e-31242296155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          k+r+rWt++LHe+Fv +v++LGG+ekAtPk+il+lm+ +gLt+ hvkSHLQkYR+
  Manes.08G045400.1.p 242 KTRIRWTQDLHEKFVVCVNRLGGAEKATPKAILKLMDTDGLTIFHVKSHLQKYRI 296
                          68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.497239299IPR017930Myb domain
SuperFamilySSF466898.6E-17240296IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.9E-28240297IPR009057Homeodomain-like
TIGRFAMsTIGR015579.8E-23242297IPR006447Myb domain, plants
PfamPF002491.4E-7246295IPR001005SANT/Myb domain
PfamPF143791.7E-19327373IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MNTSKIDCQD RIHHNHGLIG DFAVHFSQCF GNQQSWNKEI HMQQPVMEAG LQQQQYLRPD  60
RSSASIMSRF ESPASAFYAT ERFMGFPQYD CQVEAPPLCF SYSKSYDSQQ SSRENYAIDS  120
GEQAEHNLEM RSNLQPIVKS HFSDDQFYKS YKSSCSSSSE NKLYLLERNK VLNNGTASVG  180
NHGSIPFQGD QDHRVGCNPC TSPFAQLGFN SSQGIQSPRF SSAGACVSSG NPVANGAVLS  240
SKTRIRWTQD LHEKFVVCVN RLGGAEKATP KAILKLMDTD GLTIFHVKSH LQKYRIAKYM  300
PDSLEGKPER RNSISNVSQI DTKTSGMQIT EALQLQLDVQ RCLHEQLEIQ KNLQLRIEEQ  360
SRQLRMMLDQ QQQRTSNSLL RNQNLDNTTS PDEPELNLDD IEISITEDFN NTQFPSKIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-22242299259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-22242299259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-22242299158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-22242299158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-22242299158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-22242299158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-22242299259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-22242299259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-22242299259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-22242299259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-22242299259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-22242299259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.08G045400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021619908.10.0myb family transcription factor PHL5-like isoform X1
TrEMBLA0A2C9VDE50.0A0A2C9VDE5_MANES; Uncharacterized protein
STRINGcassava4.1_023877m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37403465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.11e-64G2-like family protein