PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Manes.08G045400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 420aa MW: 47380.8 Da PI: 6.6937 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 98.9 | 3.5e-31 | 242 | 296 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LHe+Fv +v++LGG+ekAtPk+il+lm+ +gLt+ hvkSHLQkYR+ Manes.08G045400.1.p 242 KTRIRWTQDLHEKFVVCVNRLGGAEKATPKAILKLMDTDGLTIFHVKSHLQKYRI 296 68****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.497 | 239 | 299 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.6E-17 | 240 | 296 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.9E-28 | 240 | 297 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.8E-23 | 242 | 297 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.4E-7 | 246 | 295 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.7E-19 | 327 | 373 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 420 aa Download sequence Send to blast |
MNTSKIDCQD RIHHNHGLIG DFAVHFSQCF GNQQSWNKEI HMQQPVMEAG LQQQQYLRPD 60 RSSASIMSRF ESPASAFYAT ERFMGFPQYD CQVEAPPLCF SYSKSYDSQQ SSRENYAIDS 120 GEQAEHNLEM RSNLQPIVKS HFSDDQFYKS YKSSCSSSSE NKLYLLERNK VLNNGTASVG 180 NHGSIPFQGD QDHRVGCNPC TSPFAQLGFN SSQGIQSPRF SSAGACVSSG NPVANGAVLS 240 SKTRIRWTQD LHEKFVVCVN RLGGAEKATP KAILKLMDTD GLTIFHVKSH LQKYRIAKYM 300 PDSLEGKPER RNSISNVSQI DTKTSGMQIT EALQLQLDVQ RCLHEQLEIQ KNLQLRIEEQ 360 SRQLRMMLDQ QQQRTSNSLL RNQNLDNTTS PDEPELNLDD IEISITEDFN NTQFPSKIS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-22 | 242 | 299 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-22 | 242 | 299 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 1e-22 | 242 | 299 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-22 | 242 | 299 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-22 | 242 | 299 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-22 | 242 | 299 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-22 | 242 | 299 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-22 | 242 | 299 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-22 | 242 | 299 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-22 | 242 | 299 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-22 | 242 | 299 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-22 | 242 | 299 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Manes.08G045400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021619908.1 | 0.0 | myb family transcription factor PHL5-like isoform X1 | ||||
TrEMBL | A0A2C9VDE5 | 0.0 | A0A2C9VDE5_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_023877m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3740 | 34 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06800.1 | 1e-64 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Manes.08G045400.1.p |