PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.08G029200.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

Protein Properties

Length: 327aa MW: 37225 Da PI: 8.6174

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.08G029200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	95.3	4.1e-30	100	202	1	99
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k ltpsdv+k++rlv+pk++ae++ g+ + l++ede g+ W+++++y+ +s++yvltkGW+++vk+++L++gD+v+F++++ Manes.08G029200.1.p 100 FEKPLTPSDVGKLNRLVIPKQHAEKYfplsGNTVDKVLLLSFEDELGKWWRFRYSYWSSSQSYVLTKGWSRYVKEKRLDAGDIVLFERHR 189 99*************************84444456689*******************************************755 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 ++++l+++++r+ Manes.08G029200.1.p 190 LDSERLFIGWRRR 202 59999****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	6.7E-39	95	206	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.44E-28	97	201	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.39E-21	99	193	No hit	No description
SMART	SM01019	8.5E-22	100	203	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.944	100	203	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.1E-27	100	202	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MSINFSSNVP KSLWWPQKDH RQSTMEPNPN SPSSQPHEES PISNPTSTSW PSHLFPHTML 60 PPHNATLNFS LNHVDDEQQY PEQDSSNRQR YSRLDKEVMF EKPLTPSDVG KLNRLVIPKQ 120 HAEKYFPLSG NTVDKVLLLS FEDELGKWWR FRYSYWSSSQ SYVLTKGWSR YVKEKRLDAG 180 DIVLFERHRL DSERLFIGWR RRGNTSSGGL WNRSLYSSSS SSGYQPYQQG HGANVTAGVP 240 YQPECLHAGS GVQNTKRLRL FGVNLECQLD EPEPSTPDGS SLSSQGPTQQ QPYGFHSAHS 300 SSSNSSHSHM DITFSRDINQ MRNHRG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	4e-47	95	202	3	113	B3 domain-containing transcription factor NGA1
5os9_B	4e-47	95	202	3	113	B3 domain-containing transcription factor NGA1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.08G029200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021619973.1	0.0	B3 domain-containing protein At2g36080-like
Swissprot	Q8GYJ2	4e-69	Y2608_ARATH; B3 domain-containing protein At2g36080
TrEMBL	A0A2C9VF81	0.0	A0A2C9VF81_MANES; Uncharacterized protein
STRING	cassava4.1_021263m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5739	34	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36080.1	9e-61	B3 family protein

Link Out ? help Back to Top
Phytozome	Manes.08G029200.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Tanaka M, et al. The Minimum Open Reading Frame, AUG-Stop, Induces Boron-Dependent Ribosome Stalling and mRNA Degradation. Plant Cell, 2016. 28(11): p. 2830-2849 [PMID:27760805]