PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.08G022300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | GRF | ||||||||
Protein Properties | Length: 410aa MW: 44355.4 Da PI: 8.6093 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 80.5 | 1.5e-25 | 159 | 202 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr+rsrk++e Manes.08G022300.1.p 159 DPEPGRCRRTDGKKWRCSRDVVAGQKYCERHVHRGRNRSRKPVE 202 79***************************************987 PP | |||||||
2 | QLQ | 53.6 | 6.6e-19 | 87 | 123 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s+F+ aQ+q+L+ Q+l+y+y++a++ vPpeLlq+i+k Manes.08G022300.1.p 87 SYFSLAQWQELELQALIYRYMLAGAAVPPELLQPIKK 123 79*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 2.2E-11 | 87 | 123 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.7E-13 | 88 | 121 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 20.957 | 88 | 123 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.918 | 159 | 203 | IPR014977 | WRC domain |
Pfam | PF08879 | 7.5E-22 | 160 | 202 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 410 aa Download sequence Send to blast |
MDFHLKQWRT RQHESEEQHS AKMPKLLMDS HPPQPQPQPH HPSESTAPLP LFVPESNSKI 60 SNVSAFPDST PAAAAAAATR FPRMGGSYFS LAQWQELELQ ALIYRYMLAG AAVPPELLQP 120 IKKSLLHSPP YFLHHPLQQY SYYQPALLQT GYWGRAAMDP EPGRCRRTDG KKWRCSRDVV 180 AGQKYCERHV HRGRNRSRKP VEIPTPTSSS TTSTSIGIGG GGASGVAGAA FSSTTSIITP 240 PLSAVTDGAS FSFSGQSPSA DLLHLNHRSS DSKHEIKGLF GHQTEVGHRS DGHILRHFFD 300 DWPRSLQEPD TAGSNVTATC LSISMPGNPS SDVSLKLSTG NAEESVGPRG NDREHPQVNW 360 TGAWGTTQVA SMGGPLAEAL RSSTSNSSPT SVLHQLPRGS ASEISYVST* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.08G022300.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021620785.1 | 0.0 | growth-regulating factor 3-like | ||||
Swissprot | Q8L8A7 | 9e-94 | GRF4_ARATH; Growth-regulating factor 4 | ||||
TrEMBL | A0A2C9VCS5 | 0.0 | A0A2C9VCS5_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_021423m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7895 | 32 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52910.1 | 5e-79 | growth-regulating factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Manes.08G022300.1.p |
Publications ? help Back to Top | |||
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