PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.08G021500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family Trihelix
Protein Properties Length: 577aa    MW: 65578.9 Da    PI: 6.6754
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.08G021500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix94.69.2e-30125210187
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                          rW++qe+l+L+e+r++++++++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r  ++ +++++f+qlea
  Manes.08G021500.1.p 125 RWPRQETLTLLEIRSRLDSKFKEANQKGPLWDEVSRIMsEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 210
                          8*************************************999*****************************98..55667*******85 PP
2trihelix62.69e-20420503283
             trihelix   2 WtkqevlaLiearremeerlrrgk..lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 
                          Wt+ e   L+++r++me+r++++    +++lWeev++km+  g+er p +Ckekwe++n+  +kikeg++k+++e+s+   yf+
  Manes.08G021500.1.p 420 WTEAECTRLMQLRSNMESRFQQSGcmEEEALWEEVAAKMACIGYERCPLMCKEKWESINNHTRKIKEGNSKKRKENSRGSCYFQ 503
                          *********************96435889*******************************************999998888886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.26122185IPR001005SANT/Myb domain
PROSITE profilePS500906.98124183IPR017877Myb-like domain
PfamPF138371.5E-20125211No hitNo description
CDDcd122039.55E-20125190No hitNo description
PROSITE profilePS500906.992412478IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.8E-5413477IPR009057Homeodomain-like
SMARTSM007171.5416480IPR001005SANT/Myb domain
PfamPF138371.6E-13419503No hitNo description
CDDcd122036.15E-19420485No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010200Biological Processresponse to chitin
GO:0046621Biological Processnegative regulation of organ growth
GO:0048442Biological Processsepal development
GO:0048498Biological Processestablishment of petal orientation
GO:0090428Biological Processperianth development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MEMEDHNHHN QYSIDLRQFI SGRPTHFPAI PQQPPAECFS AAHRNLPPQS HHYDMMMLMP  60
RVGGLHEFHS DSTPAACVPP PVAAVVTTAN SANNTVAAAA AAATSTLSGL EADAGSFGGD  120
GGTGRWPRQE TLTLLEIRSR LDSKFKEANQ KGPLWDEVSR IMSEEHGYQR SGKKCREKFE  180
NLYKYYKKTK EGKAGRQDGK HYRFFRQLEA LYGETSNPAS IPETQFVGNN LRFHTGANIS  240
TPANQEILHS QKLCDSLSLS NSSEFDTSYS EDNDLSTATL VENDSTEKRR KRRDGKSWKA  300
KIKDFIDSQM KKLIDRQEAW LEKLTKTLEQ KEQERIFREE EWRKQEAARI DREQKFWAKE  360
RAWIEARDAA LMEALRKLTG RDANDSSPED LIRAEIRNQS ENGFENRSET AHNSLKCESW  420
TEAECTRLMQ LRSNMESRFQ QSGCMEEEAL WEEVAAKMAC IGYERCPLMC KEKWESINNH  480
TRKIKEGNSK KRKENSRGSC YFQSNESMYN PGGAYCEIRE QEPETVRLQA NGGSSPVNSN  540
AGNAVSDNCF RFLMADGGEN LWENYGLKLS KGDQNQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.08G021500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021619622.10.0trihelix transcription factor PTL
SwissprotQ9LZS01e-149PTL_ARATH; Trihelix transcription factor PTL
TrEMBLA0A2C9VCS30.0A0A2C9VCS3_MANES; Uncharacterized protein
STRINGcassava4.1_005544m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20223489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.11e-148Trihelix family protein
Publications ? help Back to Top
  1. Quon T,Lampugnani ER,Smyth DR
    PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana.
    Front Plant Sci, 2017. 8: p. 152
    [PMID:28228771]