PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.08G018600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family Trihelix
Protein Properties Length: 485aa    MW: 55398.2 Da    PI: 6.4804
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.08G018600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix75.77.3e-24111210186
             trihelix   1 rWtkqevlaLiearremeerlrrgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsess 76 
                          +Wt+++v++Li a+ +++++ +++              +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +k+ +++++
  Manes.08G018600.1.p 111 KWTDSMVRLLIMAVFYIGDEAGSELndptgkkkagglsQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtACKVV 200
                          7**************88888886422334445666666**********************************************559999 PP

             trihelix  77 stcpyfdqle 86 
                          ++  +++ ++
  Manes.08G018600.1.p 201 ENQTLLETMD 210
                          9999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.1E-22109235No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MEHNGLPGGI FSGMGSGILG LERPLHQQQN PHNSQNSHHL HHPQMVAYAH RDSDHHLQSQ  60
QQTLKHSYPY PSSASREKPQ SPLSDEDEPG FAGDDNTSDG KRKVSPWQRM KWTDSMVRLL  120
IMAVFYIGDE AGSELNDPTG KKKAGGLSQK KGKWKSVSRA MMEKGFYVSP QQCEDKFNDL  180
NKRYKRVNDI LGKGTACKVV ENQTLLETMD LSQKMKEEVK KLLNSKHLFF REMCAYHNSC  240
GHGSNGVASG TNHSPELATD QSHAQHPQSS HAQQQRCSHS SETAHFVTNS RNETEGSKMG  300
KRARNEEDDE EDDDESEDDD DDYDEDEDEA IEGNSRGQNG HGHEDEDEHE EKGSRKRRKT  360
GVFSLISSLM QQLNSELMSV IQDGGRSTWE KKHWMKLRLM QLEEQQVSYQ CQAFELEKQR  420
LKWVKFSSKK EREMERAKLE NERRRLEGER MVLLIRQKEL ELLDIHQQQQ LSSNKRSDPS  480
SITG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.08G018600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021619818.10.0nucleolar transcription factor 1-B-like
TrEMBLA0A2C9VCP20.0A0A2C9VCP2_MANES; Uncharacterized protein
STRINGcassava4.1_006702m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48203457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.13e-76sequence-specific DNA binding transcription factors