PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.08G012900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 289aa    MW: 31491.1 Da    PI: 9.2691
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.08G012900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.00028189211123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++Cg  Fs+   L  H+r+H
  Manes.08G012900.1.p 189 HECSICGAGFSSGQALGGHMRRH 211
                          78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.55E-9113136No hitNo description
PROSITE profilePS501579.702114141IPR007087Zinc finger, C2H2
SMARTSM003550.26114136IPR015880Zinc finger, C2H2-like
PfamPF139121.6E-10114138IPR007087Zinc finger, C2H2
PROSITE patternPS000280116136IPR007087Zinc finger, C2H2
SuperFamilySSF576674.55E-9184211No hitNo description
Gene3DG3DSA:3.30.160.601.3E-4187213IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.2E-12188213IPR007087Zinc finger, C2H2
SMARTSM003550.017189211IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.471189216IPR007087Zinc finger, C2H2
PROSITE patternPS000280191211IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MDVQHAMPSE ELALFIKHKR NKRQRSPSPL RLPVTSSSSS GGDTGAEPLQ RIDNNNMSYS  60
STTITSIQSS GADEEDMANC LILLAQGSLH SRTRKTPETA PAGNNKVSGS SQLYECKTCN  120
RFFSSFQALG GHRASHKKPH NKSNNEEKKE IQDKDDQLLK NTSTALSLQI LPNRSALYGS  180
RNIKSNKVHE CSICGAGFSS GQALGGHMRR HRGAFATTST TKMTARTNMS LVTSSSESQE  240
SKKPRNSLQF DLNLPAAPED DLPESNFHFA SEKQVLVFSA SSLVDCHY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11824KRNKRQR
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.08G012900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021621624.10.0zinc finger protein ZAT5-like
TrEMBLA0A2C9VCG10.0A0A2C9VCG1_MANES; Uncharacterized protein
STRINGcassava4.1_032832m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.13e-44C2H2 family protein