PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.08G011300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 306aa    MW: 33711.6 Da    PI: 7.1224
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.08G011300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding551.9e-171462148
                         TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W++eEd +l+d+++++G+g +W + +++ g++R++k+c++rw++yl
  Manes.08G011300.1.p 14 KGPWSPEEDTKLKDYIEKHGTGgNWISLPQRAGLKRCGKSCRLRWLNYL 62
                         79*********************************************97 PP
2Myb_DNA-binding37.17.4e-1269111246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          g ++ +Ed ++  + +  G++ W+ Ia+ ++ gRt++++k++w++
  Manes.08G011300.1.p  69 GDFSDDEDRIICSLYANIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                          679******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.054962IPR017930Myb domain
SuperFamilySSF466891.88E-2711109IPR009057Homeodomain-like
SMARTSM007171.1E-121364IPR001005SANT/Myb domain
PfamPF002492.3E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-241569IPR009057Homeodomain-like
CDDcd001679.95E-101662No hitNo description
PROSITE profilePS5129421.86663117IPR017930Myb domain
SMARTSM007178.1E-1167115IPR001005SANT/Myb domain
PfamPF002491.2E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-2370117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDTKLKDYIE KHGTGGNWIS LPQRAGLKRC GKSCRLRWLN  60
YLRPNIKHGD FSDDEDRIIC SLYANIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMGM  120
MIHPSQAKLP HQLPASFSSL LHQVSSSLSS PSPSTAISSS SAPSYTPARS FAEPVPFSSN  180
NNSFTTAASI FSPQDSSFLA AIQNYQMKDS CSSSDGSCNN HISHDKDLEY EYGGGGASAT  240
EQMGLQNYFY YGVEESQKLL DGGGENPIID YGLEEIKQLI SSSSSCSNNF LFEENKTSEG  300
RIMYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-25141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.08G011300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021619780.10.0transcription factor RAX2-like
TrEMBLA0A2C9VCK50.0A0A2C9VCK5_MANES; Uncharacterized protein
STRINGcassava4.1_012555m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-77myb domain protein 36