PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Manes.08G009200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 186aa MW: 19802.4 Da PI: 7.5645 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 112.4 | 6.4e-35 | 28 | 99 | 6 | 77 |
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaes 77 ++++++hTkv+gR+RRvR++a+caar+F+L++eLG+ +d++tieWLl+ a+p+i+++tgt++ +a +++s Manes.08G009200.1.p 28 SSSKDRHTKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWLLRHAEPSIIAATGTGTVPAGPISTSS 99 579*********************************************************877774332222 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 8.8E-31 | 29 | 164 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.427 | 30 | 84 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 186 aa Download sequence Send to blast |
MDSESTPPPA TGSQPKTTTQ LARKSSMSSS KDRHTKVNGR GRRVRMPALC AARIFQLTRE 60 LGHRSDGETI EWLLRHAEPS IIAATGTGTV PAGPISTSSG TTPVSASPLS IPCTVQVQPM 120 GGGPVHGMFP LAPPPSCRLD LEYRHMPFTA LLLQPTAIVA EEAGEQQQEE NQEVLGENNT 180 NQQKI* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269|PubMed:21297037}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Manes.08G009200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021621104.1 | 1e-134 | transcription factor TCP11-like | ||||
Swissprot | Q9C518 | 4e-35 | TCP8_ARATH; Transcription factor TCP8 | ||||
Swissprot | Q9SJK7 | 3e-35 | TCP11_ARATH; Transcription factor TCP11 | ||||
TrEMBL | A0A2C9VCC9 | 1e-132 | A0A2C9VCC9_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_029119m | 1e-133 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3819 | 33 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G37000.1 | 2e-37 | TCP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Manes.08G009200.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|