PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.07G124500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family Trihelix
Protein Properties Length: 410aa    MW: 45693.2 Da    PI: 5.9048
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.07G124500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix81.61.1e-25301387186
             trihelix   1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          rW++ ev+aLi +r+ +e+++r+ g++  + W+e+s  m   g++r++k+Ckekwen+nk+++k  e+ +k++ e+s+tcpyf++l+
  Manes.07G124500.1.p 301 RWPEAEVQALIMLRTALEQKFRAlGAKCSNVWDEISVGMCNMGYNRTAKKCKEKWENINKYFRKSMESGGKKRLENSKTCPYFHELH 387
                          8*********************967888********************************************9************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-4291358IPR009057Homeodomain-like
PROSITE profilePS500907.433294359IPR017877Myb-like domain
PfamPF138377.4E-20300387No hitNo description
CDDcd122035.97E-26300365No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MELLTGDRQV PNSTDFPQHI SPFPAAGNLL ISNPMAEIHS SEIDRQNLPP QKLRPIRANG  60
RSPSSSQASD LPLAGGLDGT LENLGLLADQ VCGISGENGQ YFKPPVKAED SEMVLNGFAD  120
TGNPCLVADG SAGFGSGAGG EDGDPDGVRG LFEVKSSTSS DDDDSPAGIT KEFASQKRKR  180
KTREKLEDFL ENLVLKVMEK QEQMHKQLIE TMESRERERV IREEAWKQQE RERMKREEEL  240
RAQENARNLA LISFIQNVMG HKIEVPQALT TITPHAEKHG ENDASNHSIQ NDFKCDLSNR  300
RWPEAEVQAL IMLRTALEQK FRALGAKCSN VWDEISVGMC NMGYNRTAKK CKEKWENINK  360
YFRKSMESGG KKRLENSKTC PYFHELHLLY KSGFVNPGNA NIENETNSS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00552DAPTransfer from AT5G47660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.07G124500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021617588.10.0trihelix transcription factor GTL1
TrEMBLA0A2C9VME60.0A0A2C9VME6_MANES; Uncharacterized protein
STRINGcassava4.1_022038m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111123338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47660.12e-49Trihelix family protein