PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.07G117400.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

GRAS

Protein Properties

Length: 749aa MW: 83540.9 Da PI: 5.4084

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.07G117400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	395.7	5e-121	374	745	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 l++lL+ cA+av+++d ++a+ lL++++++as++gd mqR+a+ f+ +L+ar+a+s++++yka+ ++ts s++l+a++lf ++P+ Manes.07G117400.1.p 374 LRTLLTLCAQAVAADDRRNANDLLKQIRQNASSTGDGMQRVAHIFADGLEARMAGSGTQIYKAFMRKHTS---ASDVLKAYHLFLAACPF 460 5789**********************************************************999998...99*********** PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178 k+s++ N++I++ +++++++Hi+Df+i +G+QWp+L+q L+sRp+gpp+lRiTgv+ p++g + ++eetg+rL+++A++++vpfef Manes.07G117400.1.p 461 RKLSNFFSNKTIMNVAQNARKLHIVDFGILYGFQWPCLIQRLSSRPGGPPKLRITGVDFPHPGfrPAVRVEETGRRLSNYAKTFNVPFEF 550 *********************************************************9999********************* PP GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268 n+ +a++++++++e+Lr++++E+l+Vn+ ++l +llde+v +es+r++vL+l+++++P+v++ + ++++ F +rf eal +y++lf Manes.07G117400.1.p 551 NA-IAQKWDTIKIEDLRIDKDEVLVVNCLYRLRNLLDETVVVESPRNTVLNLIREMNPDVFITGIVNGAYSAPFFITRFREALFHYTTLF 639 .7************************************************************************************ PP GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358 d+le+++pre er+ +Er ++g+e++nv+acegaer+er et+++W+ r +aGF+++pl+ ++ + ak ++ + + + ++e+s++l Manes.07G117400.1.p 640 DMLETNVPREIPERMLIERDIFGWEAMNVIACEGAERIERPETYKQWQVRALRAGFRQLPLDREIFAAAKEKVNALYHKDFVIDEDSQWL 729 *************************************************************************888****** PP GRAS 359 vlgWkdrpLvsvSaWr 374 ++gWk+r ++++S+W+ Manes.07G117400.1.p 730 LQGWKGRIIYALSSWK 745 *************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	68.849	348	725	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.7E-118	374	745	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 749 aa Download sequence Send to blast
MVMDRSLKGL YGSVSGLKLN DEILSVLSGQ NLVNGSNLDN CLVSQNYANV PSLLPDLTLT 60 PNSSISSSSK SQIGDSHEDF DFSDVVLKYI SEMLMEEDIE EKTCMFQESS TALQAAEKSL 120 YELIGEKYPP SPNCESASEL DQNHKSSDQN PDSNYVNYTS SSSCSSGSNL VDPGLNCNLS 180 EYNPLRYVSQ SASQSSHSSG NSTGAGVDWF VDSPASTISE IFSDSESIMQ FRKGFEEASK 240 FIPNGSLFID LESNGLFLKD LNEESKDVAV KVEEKQEIGY FPDDSRKKKN PYSEDLNLEG 300 GRSNKQSAVC TESTVSSADF DTILLNCGQS ESALREALQN EKSKNVQQNG QIKGSGGGKG 360 RGKKHGGKRN VVDLRTLLTL CAQAVAADDR RNANDLLKQI RQNASSTGDG MQRVAHIFAD 420 GLEARMAGSG TQIYKAFMRK HTSASDVLKA YHLFLAACPF RKLSNFFSNK TIMNVAQNAR 480 KLHIVDFGIL YGFQWPCLIQ RLSSRPGGPP KLRITGVDFP HPGFRPAVRV EETGRRLSNY 540 AKTFNVPFEF NAIAQKWDTI KIEDLRIDKD EVLVVNCLYR LRNLLDETVV VESPRNTVLN 600 LIREMNPDVF ITGIVNGAYS APFFITRFRE ALFHYTTLFD MLETNVPREI PERMLIERDI 660 FGWEAMNVIA CEGAERIERP ETYKQWQVRA LRAGFRQLPL DREIFAAAKE KVNALYHKDF 720 VIDEDSQWLL QGWKGRIIYA LSSWKPDS*

Sequence ? help Back to Top

Protein Sequence Length: 749 aa Download sequence Send to blast

MVMDRSLKGL YGSVSGLKLN DEILSVLSGQ NLVNGSNLDN CLVSQNYANV PSLLPDLTLT  60
PNSSISSSSK SQIGDSHEDF DFSDVVLKYI SEMLMEEDIE EKTCMFQESS TALQAAEKSL  120
YELIGEKYPP SPNCESASEL DQNHKSSDQN PDSNYVNYTS SSSCSSGSNL VDPGLNCNLS  180
EYNPLRYVSQ SASQSSHSSG NSTGAGVDWF VDSPASTISE IFSDSESIMQ FRKGFEEASK  240
FIPNGSLFID LESNGLFLKD LNEESKDVAV KVEEKQEIGY FPDDSRKKKN PYSEDLNLEG  300
GRSNKQSAVC TESTVSSADF DTILLNCGQS ESALREALQN EKSKNVQQNG QIKGSGGGKG  360
RGKKHGGKRN VVDLRTLLTL CAQAVAADDR RNANDLLKQI RQNASSTGDG MQRVAHIFAD  420
GLEARMAGSG TQIYKAFMRK HTSASDVLKA YHLFLAACPF RKLSNFFSNK TIMNVAQNAR  480
KLHIVDFGIL YGFQWPCLIQ RLSSRPGGPP KLRITGVDFP HPGFRPAVRV EETGRRLSNY  540
AKTFNVPFEF NAIAQKWDTI KIEDLRIDKD EVLVVNCLYR LRNLLDETVV VESPRNTVLN  600
LIREMNPDVF ITGIVNGAYS APFFITRFRE ALFHYTTLFD MLETNVPREI PERMLIERDI  660
FGWEAMNVIA CEGAERIERP ETYKQWQVRA LRAGFRQLPL DREIFAAAKE KVNALYHKDF  720
VIDEDSQWLL QGWKGRIIYA LSSWKPDS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	3e-49	381	748	25	381	Protein SCARECROW
5b3h_D	3e-49	381	748	25	381	Protein SCARECROW
5hyz_A	3e-49	374	745	5	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.07G117400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021618092.1	0.0	scarecrow-like protein 9
Refseq	XP_021618093.1	0.0	scarecrow-like protein 9
TrEMBL	A0A251KJZ6	0.0	A0A251KJZ6_MANES; Uncharacterized protein
STRING	cassava4.1_002303m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	0.0	GRAS family protein

Link Out ? help Back to Top
Phytozome	Manes.07G117400.1.p