PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.07G115300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family B3
Protein Properties Length: 322aa    MW: 37357.9 Da    PI: 9.4363
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.07G115300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.29.4e-16491231898
                          --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                   B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                          +p+kfa+++g++  +   + l+ +sg++Wev+l   k++++++lt+GW+eFv    L  g f+vF+++++  f  +v + +
  Manes.07G115300.1.p  49 IPRKFARRYGSEMSS--PVFLKVPSGEKWEVQL--VKCDDEIWLTNGWQEFVGYYSLACGYFLVFEFEQNCHF--NVIIMD 123
                          9********988656..5***************..*******************************9998888..666665 PP
2B350.92.9e-162363201199
                          HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                   B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                          + ++rl +p +f +eh ++    k  t+ +++ + W v++  + ++     ++GWk+Fv++n+L++gD++vF+l++r    +++v +fr+
  Manes.07G115300.1.p 236 THLHRLNIPASFKREHFNN---RKAATFITKEEKAWFVEFV-SIGKAIARSRDGWKKFVQENHLEVGDVCVFELINRiA-CKFNVVIFRH 320
                          56799***********766...3479**************4.4444457789***********************9954.4479999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.8E-2216125IPR015300DNA-binding pseudobarrel domain
CDDcd100173.05E-1520121No hitNo description
SMARTSM010191.1E-822125IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-2037125IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.64749125IPR003340B3 DNA binding domain
PfamPF023625.0E-1349122IPR003340B3 DNA binding domain
SuperFamilySSF1019363.53E-19222320IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.3E-19222320IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.871226321IPR003340B3 DNA binding domain
CDDcd100171.14E-17227319No hitNo description
SMARTSM010191.9E-11229321IPR003340B3 DNA binding domain
PfamPF023626.3E-14235320IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MDSWPKSGDG RRLMFRAAKP HFFKIILDDT IRRRKLRIYS GDFYVYQGIP RKFARRYGSE  60
MSSPVFLKVP SGEKWEVQLV KCDDEIWLTN GWQEFVGYYS LACGYFLVFE FEQNCHFNVI  120
IMDKSSSEID YPLSHNEDTC LEEEFPGPKV EETESDHSLP SPLPFTQPHK KLKLEKPTKN  180
IKSLCLTKQS EGKRGKAKET GRMQPLTAEE KANALHRAGA NFKSGNPYFM IVMQQTHLHR  240
LNIPASFKRE HFNNRKAATF ITKEEKAWFV EFVSIGKAIA RSRDGWKKFV QENHLEVGDV  300
CVFELINRIA CKFNVVIFRH T*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.07G115300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021618014.10.0B3 domain-containing transcription factor VRN1-like
TrEMBLA0A2C9VMM10.0A0A2C9VMM1_MANES; Uncharacterized protein
STRINGcassava4.1_027517m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.18e-41B3 family protein