PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.07G115100.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family B3
Protein Properties Length: 295aa    MW: 33960.2 Da    PI: 10.1648
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.07G115100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.14.3e-1519922199
                         HH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                   B3 21 kfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99
                         +f++++g++   s  + l+ ++gr+W+++l   k++g+++l++GW+eF +   L  g f+vF++++r   f  +v +f+k
  Manes.07G115100.2.p 19 QFVRKYGKD--LSNPVLLKVPDGRTWQMEL--IKSDGEVWLQNGWQEFLEYYSLAHGSFLVFEYNKRdCHF--NVIIFDK 92
                         799999877..7778***************..********************************9886777..9999987 PP
2B350.63.5e-16198292199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrse 89 
                          ffk  ++s +l++ ++ +p++f+++++++ +++ +l++e+   r W vkl++  + ++  +l+ GW+ Fv++n L+ gD+++F+l++r++
  Manes.07G115100.2.p 198 FFKLIISSGHLTRPIVHVPRNFISNIKKS-TKKAKLQVEN---RWWIVKLTIYPHHNKgQFLS-GWSVFVRENSLRKGDVCIFELIDRET 282
                          89*********************777654.4555677666...89*****7744444324555.**********************9999 PP

                          E..EEEEE-S CS
                   B3  90 felvvkvfrk 99 
                          +  +v++fr+
  Manes.07G115100.2.p 283 ALVKVTIFRN 292
                          9899999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010192.2E-5193IPR003340B3 DNA binding domain
PROSITE profilePS5086312.182193IPR003340B3 DNA binding domain
PfamPF023621.1E-121992IPR003340B3 DNA binding domain
CDDcd100179.47E-161991No hitNo description
Gene3DG3DSA:2.40.330.102.5E-181993IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-171993IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.9E-15192292IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.59E-15196291IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.0E-11198293IPR003340B3 DNA binding domain
PfamPF023622.3E-13198292IPR003340B3 DNA binding domain
CDDcd100177.79E-17198291No hitNo description
PROSITE profilePS5086312.957198293IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
LVLQTVISKH PKRKINKIQF VRKYGKDLSN PVLLKVPDGR TWQMELIKSD GEVWLQNGWQ  60
EFLEYYSLAH GSFLVFEYNK RDCHFNVIIF DKTASEIDYH VNVTNGEIKE PKMIEETETD  120
ASVEISDHLM LSRKRKGKSP LPFSQPQKKV KLETPTENTS LHCCGNPVQG NKNPLAHEQS  180
NHPAAIETSK NFTSLNPFFK LIISSGHLTR PIVHVPRNFI SNIKKSTKKA KLQVENRWWI  240
VKLTIYPHHN KGQFLSGWSV FVRENSLRKG DVCIFELIDR ETALVKVTIF RNAK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.07G115100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021618013.10.0B3 domain-containing protein LOC_Os12g40080-like
TrEMBLA0A2C9VKH10.0A0A2C9VKH1_MANES; Uncharacterized protein (Fragment)
STRINGcassava4.1_030600m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-34B3 family protein