PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.07G115100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | B3 | ||||||||
Protein Properties | Length: 300aa MW: 34541.9 Da PI: 10.2781 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56.5 | 4.9e-18 | 16 | 97 | 13 | 99 |
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 +++ ++p+kf++++g++ s + l+ ++gr+W+++l k++g+++l++GW+eF + L g f+vF++++r f +v +f+k Manes.07G115100.1.p 16 NKIQSIPRKFVRKYGKD--LSNPVLLKVPDGRTWQMEL--IKSDGEVWLQNGWQEFLEYYSLAHGSFLVFEYNKRdCHF--NVIIFDK 97 45679*********977..7778***************..********************************9886777..9999987 PP | |||||||
2 | B3 | 50.5 | 3.6e-16 | 203 | 297 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrse 89 ffk ++s +l++ ++ +p++f+++++++ +++ +l++e+ r W vkl++ + ++ +l+ GW+ Fv++n L+ gD+++F+l++r++ Manes.07G115100.1.p 203 FFKLIISSGHLTRPIVHVPRNFISNIKKS-TKKAKLQVEN---RWWIVKLTIYPHHNKgQFLS-GWSVFVRENSLRKGDVCIFELIDRET 287 89*********************777654.4555677666...89*****7744444324555.**********************9999 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 + +v++fr+ Manes.07G115100.1.p 288 ALVKVTIFRN 297 9899999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 5.2E-10 | 3 | 98 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.6E-21 | 15 | 98 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.6E-15 | 17 | 97 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 8.24E-20 | 18 | 98 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.65E-18 | 20 | 96 | No hit | No description |
PROSITE profile | PS50863 | 13.084 | 21 | 98 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.2E-15 | 197 | 297 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.65E-15 | 201 | 296 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.4E-13 | 203 | 297 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.957 | 203 | 298 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.0E-11 | 203 | 298 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 8.36E-17 | 203 | 296 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
LVLQTVISKH PKRKINKIQS IPRKFVRKYG KDLSNPVLLK VPDGRTWQME LIKSDGEVWL 60 QNGWQEFLEY YSLAHGSFLV FEYNKRDCHF NVIIFDKTAS EIDYHVNVTN GEIKEPKMIE 120 ETETDASVEI SDHLMLSRKR KGKSPLPFSQ PQKKVKLETP TENTSLHCCG NPVQGNKNPL 180 AHEQSNHPAA IETSKNFTSL NPFFKLIISS GHLTRPIVHV PRNFISNIKK STKKAKLQVE 240 NRWWIVKLTI YPHHNKGQFL SGWSVFVREN SLRKGDVCIF ELIDRETALV KVTIFRNAK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.07G115100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021618013.1 | 0.0 | B3 domain-containing protein LOC_Os12g40080-like | ||||
TrEMBL | A0A2C9VKN9 | 0.0 | A0A2C9VKN9_MANES; Uncharacterized protein (Fragment) | ||||
STRING | cassava4.1_030600m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 4e-36 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.07G115100.1.p |