PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Manes.07G115000.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 402aa MW: 45673.2 Da PI: 8.8335 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.7 | 1.4e-15 | 28 | 113 | 10 | 100 |
HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 ++ks + +pk+fa+++gg s ++l+ + gr W+v++ +k +g++++++GW++F + L g f+vF++d++ f +v++f+ Manes.07G115000.2.p 28 YFKSFCQGVPKRFARKYGGF--LSNPVVLKVPGGRIWQVEV--TKFDGEVWFQNGWQGFLEYYSLVHGSFLVFEYDKSsCHF--NVTIFD 111 567777889********877..5667***************..********************************9964555..*****9 PP SS CS B3 99 ks 100 ks Manes.07G115000.2.p 112 KS 113 85 PP | |||||||
2 | B3 | 65.1 | 1.1e-20 | 238 | 340 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkld. 85 f+ v+ ps+v+ +++p +fa ++ +k+++ ++ l+ ++gr+W+vk+ ++k s++ +t+GW+ F+++n L++gD++ F+l+ Manes.07G115000.2.p 238 FLIVMQPSYVHPGEKMSIPASFAMKYfPLKHTS--DVNLNGLDGRTWSVKFYFNKASNGqpmAKITRGWRVFAEDNCLEVGDVCAFELIm 325 778999********************7666544..8***************88888888787999**********************665 PP .SSSEE..EEEEE-S CS B3 86 .grsefelvvkvfrk 99 + +++++v++fr+ Manes.07G115000.2.p 326 iQGAKATFKVTIFRN 340 355888899999986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.3E-22 | 3 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.98E-19 | 7 | 111 | No hit | No description |
SuperFamily | SSF101936 | 1.02E-19 | 27 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 6.7E-13 | 28 | 112 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.5E-10 | 28 | 113 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.857 | 36 | 113 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.4E-25 | 231 | 341 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.51E-23 | 231 | 340 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.64E-26 | 236 | 339 | No hit | No description |
Pfam | PF02362 | 4.9E-20 | 238 | 340 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-15 | 238 | 341 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.833 | 238 | 341 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 402 aa Download sequence Send to blast |
MFAAERPHFF KIILEETIRD KKLMLFAYFK SFCQGVPKRF ARKYGGFLSN PVVLKVPGGR 60 IWQVEVTKFD GEVWFQNGWQ GFLEYYSLVH GSFLVFEYDK SSCHFNVTIF DKSASEIEYP 120 VSVTNGDDKE INDLQEEIQE PKIIEETEND SYVETLDDSV LGRKRKEKAL LSSLQPQKMM 180 KVENPTGNTS LHFPGKQVEG KKQTSDCIAV RKKPLTTQEK TKAVHRASVN FKSDNPFFLI 240 VMQPSYVHPG EKMSIPASFA MKYFPLKHTS DVNLNGLDGR TWSVKFYFNK ASNGQPMAKI 300 TRGWRVFAED NCLEVGDVCA FELIMIQGAK ATFKVTIFRN KKGDKMISKE EEESNSPGAI 360 AADKGFTSVH PFFKAVISSS YLDTMHVPQN FISNIKQSTE R* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 3e-15 | 209 | 339 | 21 | 141 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 3e-15 | 209 | 339 | 21 | 141 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 162 | 167 | RKRKEK |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Manes.07G115000.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021619043.1 | 0.0 | B3 domain-containing transcription factor VRN1-like isoform X2 | ||||
TrEMBL | A0A2C9VKH9 | 0.0 | A0A2C9VKH9_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_023688m | 0.0 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G18990.1 | 7e-38 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Manes.07G115000.2.p |