PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.07G115000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | B3 | ||||||||
Protein Properties | Length: 406aa MW: 46133.8 Da PI: 8.6396 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.6 | 1.4e-15 | 28 | 113 | 10 | 100 |
HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 ++ks + +pk+fa+++gg s ++l+ + gr W+v++ +k +g++++++GW++F + L g f+vF++d++ f +v++f+ Manes.07G115000.1.p 28 YFKSFCQGVPKRFARKYGGF--LSNPVVLKVPGGRIWQVEV--TKFDGEVWFQNGWQGFLEYYSLVHGSFLVFEYDKSsCHF--NVTIFD 111 567777889********877..5667***************..********************************9964555..*****9 PP SS CS B3 99 ks 100 ks Manes.07G115000.1.p 112 KS 113 85 PP | |||||||
2 | B3 | 65.1 | 1.1e-20 | 242 | 344 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkld. 85 f+ v+ ps+v+ +++p +fa ++ +k+++ ++ l+ ++gr+W+vk+ ++k s++ +t+GW+ F+++n L++gD++ F+l+ Manes.07G115000.1.p 242 FLIVMQPSYVHPGEKMSIPASFAMKYfPLKHTS--DVNLNGLDGRTWSVKFYFNKASNGqpmAKITRGWRVFAEDNCLEVGDVCAFELIm 329 778999********************7666544..8***************88888888787999**********************665 PP .SSSEE..EEEEE-S CS B3 86 .grsefelvvkvfrk 99 + +++++v++fr+ Manes.07G115000.1.p 330 iQGAKATFKVTIFRN 344 355888899999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.4E-22 | 3 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.68E-19 | 7 | 111 | No hit | No description |
SuperFamily | SSF101936 | 1.04E-19 | 27 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 6.8E-13 | 28 | 112 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.5E-10 | 28 | 113 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.857 | 36 | 113 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 4.51E-23 | 235 | 344 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.5E-25 | 235 | 345 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.12E-26 | 240 | 343 | No hit | No description |
PROSITE profile | PS50863 | 14.833 | 242 | 345 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.0E-20 | 242 | 344 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-15 | 242 | 345 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 406 aa Download sequence Send to blast |
MFAAERPHFF KIILEETIRD KKLMLFAYFK SFCQGVPKRF ARKYGGFLSN PVVLKVPGGR 60 IWQVEVTKFD GEVWFQNGWQ GFLEYYSLVH GSFLVFEYDK SSCHFNVTIF DKSASEIEYP 120 VSVTNGDDKE INDLQEEIQE PKIIEETEND SYVETLDDSV LGRKRKEKAL LSSLQPQKMM 180 KVENPTGNTS LHFPGKQVEV DFVGKKQTSD CIAVRKKPLT TQEKTKAVHR ASVNFKSDNP 240 FFLIVMQPSY VHPGEKMSIP ASFAMKYFPL KHTSDVNLNG LDGRTWSVKF YFNKASNGQP 300 MAKITRGWRV FAEDNCLEVG DVCAFELIMI QGAKATFKVT IFRNKKGDKM ISKEEEESNS 360 PGAIAADKGF TSVHPFFKAV ISSSYLDTMH VPQNFISNIK QSTER* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 3e-15 | 213 | 343 | 21 | 141 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 3e-15 | 213 | 343 | 21 | 141 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 162 | 167 | RKRKEK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.07G115000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021619041.1 | 0.0 | B3 domain-containing transcription factor VRN1-like isoform X1 | ||||
TrEMBL | A0A2C9VKM6 | 0.0 | A0A2C9VKM6_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_023688m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 5e-37 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.07G115000.1.p |