PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.07G113000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family B3
Protein Properties Length: 310aa    MW: 35168.3 Da    PI: 9.8959
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.07G113000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.44.2e-2124114198
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          ffk+ ++s vl+  rl++pkkf+++hg+    s  ++l+ ++g++W+v+l   ++++ ++l+kGW+eF + + Lk g ++vFk++g+ +f
  Manes.07G113000.1.p  24 FFKIILQSTVLEG-RLRIPKKFVKNHGKC--LSSPMILKVPTGNTWKVEL--LRSGDDVWLAKGWQEFTEYHSLKHGNMLVFKYEGDCQF 108
                          899999***9987.6********999855..6667***************..**********************************9999 PP

                          ..EEEEE- CS
                   B3  91 elvvkvfr 98 
                             v +f+
  Manes.07G113000.1.p 109 --SVLIFD 114
                          ..888886 PP
2B335.22.2e-112273041698
                          EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                   B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                          +++p +f+++h++ ++    ++l+    ++W+v+l ++ + ++  l +G   F ++ngLk gD+++F+l+gr  + ++v++++
  Manes.07G113000.1.p 227 VRVPTSFIRAHMKCETHA--VKLK-VAEKTWRVNLYINLQNSASKLCGGFTLFLRENGLKKGDVCIFELIGR--RMMNVHIIK 304
                          679********8766555..4443.467*******6655555567899**********************95..444777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.7E-2818116IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-2619116IPR015300DNA-binding pseudobarrel domain
CDDcd100172.19E-2222114No hitNo description
PROSITE profilePS5086314.62123116IPR003340B3 DNA binding domain
SMARTSM010191.1E-1724116IPR003340B3 DNA binding domain
PfamPF023627.4E-1824114IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.2E-18206305IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.22E-15207304IPR015300DNA-binding pseudobarrel domain
CDDcd100179.64E-13211304No hitNo description
PROSITE profilePS5086310.461212306IPR003340B3 DNA binding domain
SMARTSM010190.0081213306IPR003340B3 DNA binding domain
PfamPF023623.6E-9227305IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MSSQGFQPKE NDDTFNITAK IPQFFKIILQ STVLEGRLRI PKKFVKNHGK CLSSPMILKV  60
PTGNTWKVEL LRSGDDVWLA KGWQEFTEYH SLKHGNMLVF KYEGDCQFSV LIFDMSAVEI  120
EYPDRDIHSG KETEKHENEE DFKGKVQNKR SKGNQSPVID IDDSDCFIQE SRGKSSKLRR  180
KRGVGKKPGR PPNSNISTDH ESANKFTSSY PYFEAILGAN GTGQIYVRVP TSFIRAHMKC  240
ETHAVKLKVA EKTWRVNLYI NLQNSASKLC GGFTLFLREN GLKKGDVCIF ELIGRRMMNV  300
HIIKRASDA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.07G113000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021618011.10.0putative B3 domain-containing protein Os03g0621600
TrEMBLA0A2C9VKF90.0A0A2C9VKF9_MANES; Uncharacterized protein
STRINGcassava4.1_012400m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.16e-30B3 family protein