PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.07G111400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 207aa MW: 22990.1 Da PI: 8.294 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 43.4 | 4.3e-14 | 14 | 55 | 4 | 45 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 e+k + v+f+kRr+g++ KA EL +LCda+ av + s++++ Manes.07G111400.1.p 14 EDKKQLLVSFTKRRQGLFNKAAELFTLCDAQLAVFVSSPSNN 55 6777778*******************************9874 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.8E-16 | 3 | 66 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 15.012 | 3 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.9E-7 | 5 | 25 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.14E-18 | 6 | 88 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 7.15E-19 | 6 | 82 | No hit | No description |
Pfam | PF00319 | 2.6E-14 | 14 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.9E-7 | 25 | 40 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.9E-7 | 40 | 61 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MAAKSRKIPM VKREDKKQLL VSFTKRRQGL FNKAAELFTL CDAQLAVFVS SPSNNSKRKV 60 YSFGHPSVDQ VLDAFLENRL PNLVSYEYGA NKQYALSLSN EIKAMEAELN GKNKKVENLD 120 LEFFENSKSV EELEALVDAL QELTKKAKSR FCNNNSSVSP DVASNENSLL DDSPPTSTAL 180 TTSGYWLCPP STRPCFAKDI SPTTYM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.07G111400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021617591.1 | 1e-143 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A2C9VKI6 | 1e-149 | A0A2C9VKI6_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_034008m | 1e-127 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14582 | 7 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 1e-20 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | Manes.07G111400.1.p |