PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.07G102200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | LBD | ||||||||
Protein Properties | Length: 217aa MW: 23576 Da PI: 6.4837 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 136.8 | 7.8e-43 | 61 | 160 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l Manes.07G102200.1.p 61 PCAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVNEL 150 7***************************************************************************************** PP DUF260 91 kaelallkee 100 +a+la++++e Manes.07G102200.1.p 151 QAQLAKAQAE 160 *****99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.172 | 60 | 161 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.6E-43 | 61 | 158 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MGNLDKAVAG ITPIAVPSPF SYSPPSSSPS LSSHSSLGLP SPSQSSPTAP PPPPPSVVLS 60 PCAACKILRR RCVEKCVLAP YFPPTEPYKF TIAHRVFGAS NIIKFLQELP ESQRADAVSS 120 MVYEANARIR DPVYGCAGAI CQLQKQVNEL QAQLAKAQAE VVNMQCQQAN LVALICMEMT 180 QSHHYQEPIF QQQQYIDTSC FLDDTNLATP WEPLWT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-43 | 60 | 168 | 10 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-43 | 60 | 168 | 10 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.07G102200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021618102.1 | 1e-158 | LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 1e-72 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A2C9VMK5 | 1e-157 | A0A2C9VMK5_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_021199m | 1e-157 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1303 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 2e-63 | LOB domain-containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Manes.07G102200.1.p |