PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.07G099800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 1038aa    MW: 114446 Da    PI: 4.8268
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.07G099800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.12.1e-183783148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g WT+eEde+l +av+++ g++Wk+Ia+++   Rt+ qc +rwqk+l
  Manes.07G099800.1.p 37 KGQWTAEEDEILRKAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 83
                         799****************************9.************986 PP
2Myb_DNA-binding65.87.7e-2189135148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g+W++eEde+++++v+++G++ W+tIa++++ gR +kqc++rw+++l
  Manes.07G099800.1.p  89 KGPWSKEEDEIIIELVNKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 135
                          79******************************.*************97 PP
3Myb_DNA-binding46.58.7e-15141183145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          + +WT++E++ l++a++ +G++ W+   + ++ gRt++ +k++w+
  Manes.07G099800.1.p 141 KEAWTQQEELALIRAHQIYGNR-WAELTKFLP-GRTDNAIKNHWN 183
                          579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.7053283IPR017930Myb domain
SMARTSM007172.2E-153685IPR001005SANT/Myb domain
PfamPF002498.8E-163783IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-223892IPR009057Homeodomain-like
SuperFamilySSF466899.33E-163893IPR009057Homeodomain-like
CDDcd001673.62E-144083No hitNo description
PROSITE profilePS5129433.90384139IPR017930Myb domain
SuperFamilySSF466892.28E-3186182IPR009057Homeodomain-like
SMARTSM007176.5E-2088137IPR001005SANT/Myb domain
PfamPF002492.8E-1989135IPR001005SANT/Myb domain
CDDcd001671.92E-1791135No hitNo description
Gene3DG3DSA:1.10.10.608.9E-2893138IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-20139190IPR009057Homeodomain-like
PROSITE profilePS5129418.727140190IPR017930Myb domain
SMARTSM007178.6E-15140188IPR001005SANT/Myb domain
PfamPF002496.4E-13141184IPR001005SANT/Myb domain
CDDcd001672.57E-11143183No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 1038 aa     Download sequence    Send to blast
MESDKSISAP SDGHNERVQR IQPLHGRTSG PARRSTKGQW TAEEDEILRK AVQRFKGKNW  60
KKIAECFKDR TDVQCLHRWQ KVLNPELVKG PWSKEEDEII IELVNKYGPK KWSTIAQHLP  120
GRIGKQCRER WHNHLNPSIN KEAWTQQEEL ALIRAHQIYG NRWAELTKFL PGRTDNAIKN  180
HWNSSVKKKL DSYLASGLLE QFQGVPLVVH QNQPMQSSSS RVQSCGDDTG PKCGTETEEV  240
SECSQESVVA GCSQTASGLG NAVLHTREEF QLTEEACLGK EGSSSPASCS EQYFTSVGDV  300
TFSIPEIPCE VGCPSSFLQQ NFSQNPLTCA SSDYQFNLQE LPNMSSLELG QDSSGLSTHC  360
IAANESHELV NVSFQTSMGN ITASSAKPDH ILISDDECCR FLFSDAMNDG IFSSGNFTKG  420
PNSVACIDSI SGQSSNYQIS ETDRTTQSFS PSKSGVLTTS CSQPFPSGPS LLSSDDSNPV  480
CGKESNQLTN HSFAAPEQEL IRCEHDDDFI YTNGIDSSPC GDRTDSTCLQ EQHYLKEPSK  540
LVPVNTFASG YVTMQSCPVD EMPNVQTEQQ DAGALCYEPP RFPSLDVPFL SCDLIQSGSD  600
MQQEYSPLGI RQLMMSSMNC ITPFRLWDSP SRDDSPDAVL KSAARTFTGT PSILKKRNRD  660
LLSPLSDRRV DKKLEIDMTS SLTKEFSRLD VMFDESETHR ASLLSPSDQK RNSGSTYEDK  720
ENLDPALEGR QENGRDCCAF VDKKVSEKDC DKSDSQDNKK HGTSDADAKN KVHADVEQPS  780
GMLVEDSMND LLLFSPDQVG FKGDKAFAPS SRTPKNLYRK ILGTLSEKCI ALESSPGNSC  840
IVVRSPTFCK KNHDLLPAST SAPLENTIDN TENDAGTENL SIFGGTPFKR SIESPSAWKS  900
PWFINSFLPG PRVDTDISIE DIGYFMSPGD RSYDAIALMK QLSEHTASAY ADALEVLGNE  960
TPEALLEKRC SNENQENNDV LNNQLENHSR LASNISTECR TLDFSECEAP GKGTEKGRAS  1020
TAMTFSSPSS YLLKGCR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-70371906159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-70371906159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00466DAPTransfer from AT4G32730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.07G099800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021618556.10.0transcription factor MYB3R-1
TrEMBLA0A2C9VK700.0A0A2C9VK70_MANES; Uncharacterized protein
STRINGcassava4.1_024255m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37273362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.20.0Homeodomain-like protein