PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.07G097600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 1652aa    MW: 183152 Da    PI: 6.1213
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.07G097600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.0004515361561123
                           EEET..TTTEEESSHHHHHHHHHH.T CS
              zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
                           +kC    C++sF +k +L+ H r+ +
  Manes.07G097600.1.p 1536 HKCDleGCTMSFETKAELQLHKRNqC 1561
                           789999****************9877 PP
2zf-C2H211.30.001116191645123
                           EEET..TTTEEESSHHHHHHHHHH..T CS
              zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                           ykC+   Cg sF+  s++ rH r+  H
  Manes.07G097600.1.p 1619 YKCKveGCGLSFRFVSDFSRHRRKtgH 1645
                           99*********************9777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005451.9E-141555IPR003349JmjN domain
PROSITE profilePS5118313.6891657IPR003349JmjN domain
PfamPF023751.5E-141750IPR003349JmjN domain
SuperFamilySSF511973.02E-26295462No hitNo description
SMARTSM005583.3E-46295464IPR003347JmjC domain
PROSITE profilePS5118434.354298464IPR003347JmjC domain
PfamPF023734.3E-35329447IPR003347JmjC domain
Gene3DG3DSA:3.30.160.607.8E-415321558IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551015361558IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.78E-615591596No hitNo description
PROSITE profilePS5015711.82215591588IPR007087Zinc finger, C2H2
SMARTSM003550.1415591583IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.4E-615601583IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028015611583IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.7E-1015841611IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.0315891618IPR007087Zinc finger, C2H2
SMARTSM003550.001515891613IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028015911613IPR007087Zinc finger, C2H2
SuperFamilySSF576671.07E-1015991641No hitNo description
Gene3DG3DSA:3.30.160.602.1E-1116121642IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.55416191650IPR007087Zinc finger, C2H2
SMARTSM003550.2216191645IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028016211645IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1652 aa     Download sequence    Send to blast
MGNVEIPKWL KDLPLAPEFR PTDTEFADPI AYISKIEKEA SAFGICKIIP PLPKPSKRYV  60
FFNLNKSLSR CPELGDVDLS NASSSMNTGL ADCGNEGGVR AVFTTRHQEL GQGMKRTKGM  120
VKEGTQLSVH KQVWQSGEIY TLEQFESKSK AFARSLLGMI KEVNPLVIEA LFWKAASEKP  180
IHVEYANDVP GSAFGEPEGQ FRYFHRRRRK RASYKSYRRS TESSDFQKKE MNNVNNSCND  240
EIKDATCKND PSTSSGPISG SSITSSTSSL EDNLRSSKRK NVNAITDMEG TAGWKLSNSP  300
WNLQVIARSP GSITRFMPDD IPGVTSPMIY IGMLFSWFAW HVEDHELHSM NFLHTGSPKT  360
WYAVPGDYAF AFEEVIRTEA YGGSIDRLGA LTLLGEKTTL LSPEVVVSAS IPCCRLIQNP  420
GEFVVTFPRA YHVGFSHGFN CGEAANFGTP QWLQVAKEAA VRRAAMNYLP MLSHQQLLYL  480
LTMSFVSRVP RSLLPGARSS RLRDRLKEER ELSVKKAFIQ DMLKENSILS ALLGKDSTYN  540
VVIWNADLLP CASKESQLPN SVATIAEENV LHTHSEDKSN AIGNDLLKEM SLYMESLNDL  600
YVDDDDDLSC DFQVDSGTLA CVACGILGFP FMCVVQPSGR ASIELLQGDH PLVQEGSRVE  660
NFDSYHSSAA CDGSIKCSVP DNLHPVSDLF LPLTNLPMPR GWDNSSKFLR PRIFCLEHGV  720
QIEEMLQSKG GANMLVICHS DYQKIKAHAA AISEDIGTPF NYNEVLLESA SQEDLNLICL  780
AIDNEDHDES GQEWTSKMGI NLRFCLKVRK NAPSSKAQHA LALGGLFSDG SSSDFLNIKW  840
QSRRSRSRTK LNWPAHCKPC QNVKPNKNDA LGKRSGRVNI EKGQKLIQYT RRKYKVKIDC  900
SSNWSQCCPG NHVVEEVSVA NCEDLVKHTG KTCKIGPTVE ISGRDSAGLD FSPLGTSGVL  960
HEVKVLEATG NMSLNSAPLH VAGSLLTANV AVEHTEKVEN QTLEESNGYE IVCNTAACGN  1020
LEMQHKEKVT GGTSEVEDSN AIECLSPCVV PDDKRSGVQE EHQIMEKNNF RNETYNMVSE  1080
GQHKFLASRD VLENEVTDLA TAASVHACAP VGQMENLVVE QSSMNCEVCD CATLDNEVQV  1140
ALQTTGKSTG SRSILYDDTP INQLGASGEE MAEFSQGTCF SKDKCYGFNK LQHEVQFTGR  1200
TNVEELIPIN ARLVNHPNQV SEDEFSEIFR DPCDSVKLWD GATSENVVQQ AIEATNESKA  1260
EHISFSVAQM EIDQPTIAST EGFPEVIGRI TASKDLCTTT MSSSDSKKVL KIPTANTSSV  1320
EELVLHSPTQ MQDTSNMEDP AEEYSEAPRE KYASEDTVGV NLDTEVQQEI HSDDGMNKDD  1380
EGPQICETTS AIDKEEHLSG RVTQINQSNP DPFTKCSTTD EESCTEENML KGQEVCSSCE  1440
QESIKSTVVE PGSTAGKGRK RKNEVDQLTD KKLNCNGFIK SPCEGLRPRA RKDARSRNGI  1500
NIRKSALDNP PRKKARKPSD VSVPCTKKEE ITKRSHKCDL EGCTMSFETK AELQLHKRNQ  1560
CPYEGCRKRF STHKYAIIHQ RVHEGDRPLK CPWNGCSMSF KWAWARTEHI RVHTGEKPYK  1620
CKVEGCGLSF RFVSDFSRHR RKTGHYVNTP A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A1e-56278478137346Transcription factor jumonji (Jmj) family protein
6ip4_A1e-56278478137346Arabidopsis JMJ13
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs probably as a histone 'Lys-4' (H3K4me) demethylase. Involved in transcriptional gene regulation. Acts as a repressor of the photoperiodic flowering pathway and of FT. Binds around the transcription start site of the FT locus. {ECO:0000269|PubMed:15377760, ECO:0000269|PubMed:18467490, ECO:0000269|PubMed:19946624}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.07G097600.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021617256.10.0probable lysine-specific demethylase ELF6
SwissprotQ6BDA00.0ELF6_ARATH; Probable lysine-specific demethylase ELF6
TrEMBLA0A2C9VK120.0A0A2C9VK12_MANES; Uncharacterized protein
STRINGcassava4.1_000153m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80313034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.10.0C2H2 family protein
Publications ? help Back to Top
  1. Heidari B,Nemie-Feyissa D,Kangasjärvi S,Lillo C
    Antagonistic regulation of flowering time through distinct regulatory subunits of protein phosphatase 2A.
    PLoS ONE, 2013. 8(7): p. e67987
    [PMID:23976921]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Crevillén P, et al.
    Epigenetic reprogramming that prevents transgenerational inheritance of the vernalized state.
    Nature, 2014. 515(7528): p. 587-90
    [PMID:25219852]
  4. Yang H,Howard M,Dean C
    Physical coupling of activation and derepression activities to maintain an active transcriptional state at FLC.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(33): p. 9369-74
    [PMID:27482092]