PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.07G092200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | Trihelix | ||||||||
Protein Properties | Length: 497aa MW: 54005.3 Da PI: 7.9772 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 59.2 | 1e-18 | 108 | 201 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergf...erspkqCkekwenlnkryk....kikegekkrtsessstcpyfd 83 +W+++ + +L+ea++e+ ++l+rg+l++ +Weev+++++erg ++s +qCk+k++nl+kryk +i++++++ s+ ss++ +f+ Manes.07G092200.1.p 108 EWSDSAISCLLEAYTEKYNQLNRGNLRGRDWEEVAEAVSERGGsnnKKSVEQCKNKIDNLKKRYKvelqRINNSSGGYGSGGSSSWHWFK 197 5*************************************8887645578****************94333444444444699999****** PP trihelix 84 qlea 87 q+ea Manes.07G092200.1.p 198 QIEA 201 *985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.1E-21 | 106 | 202 | No hit | No description |
SMART | SM00595 | 0.0021 | 116 | 207 | IPR006578 | MADF domain |
Gene3D | G3DSA:3.40.1160.10 | 9.5E-72 | 246 | 489 | IPR001048 | Aspartate/glutamate/uridylate kinase |
SuperFamily | SSF53633 | 3.27E-57 | 256 | 489 | IPR001048 | Aspartate/glutamate/uridylate kinase |
Hamap | MF_01220_B | 33.072 | 256 | 490 | IPR015963 | Uridylate kinase, bacteria |
CDD | cd04254 | 1.79E-115 | 259 | 490 | No hit | No description |
Pfam | PF00696 | 9.1E-24 | 260 | 469 | IPR001048 | Aspartate/glutamate/uridylate kinase |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006221 | Biological Process | pyrimidine nucleotide biosynthetic process | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0033862 | Molecular Function | UMP kinase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 497 aa Download sequence Send to blast |
MATDDFPLID PHAPPPHAPT RHPDSESVNG GDYFAAYADS DHDKSGSGAP ATPSSNRSHQ 60 IQNQHHHYYY NNSNSKRHKT SGSNVESESN TNNNATEYRT DYRKDREEWS DSAISCLLEA 120 YTEKYNQLNR GNLRGRDWEE VAEAVSERGG SNNKKSVEQC KNKIDNLKKR YKVELQRINN 180 SSGGYGSGGS SSWHWFKQIE AIMSNPTNAK ASAGAESECD AGSGGNGSLM ARPLKRYTPN 240 SVAVANNMKA KSVPNLKWRR VVFKISGSAL AGNCQNIDPK VAMQIAREVA TACRLGLEVA 300 IVVGGRNFFC GDSWISATGL ERSTAYQIGM MATVMNSILL QSALEKLGIQ SRVQSAFTMP 360 ELVEPYNRQR AIRHLEKGRV VIFGGVGAGA GNPLFSTDTA AALRASEINA DALLKGTNVA 420 GIYDCHSANT SMIVDHMSFR EVVSRGVTFM DMMAMTYCEE NGIPVVVFNL LEPGNISRAL 480 CGNQVGTLID QTGRIS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3nwy_A | 2e-63 | 227 | 489 | 18 | 279 | Uridylate kinase |
3nwy_B | 2e-63 | 227 | 489 | 18 | 279 | Uridylate kinase |
3nwy_C | 2e-63 | 227 | 489 | 18 | 279 | Uridylate kinase |
3nwy_D | 2e-63 | 227 | 489 | 18 | 279 | Uridylate kinase |
3nwy_E | 2e-63 | 227 | 489 | 18 | 279 | Uridylate kinase |
3nwy_F | 2e-63 | 227 | 489 | 18 | 279 | Uridylate kinase |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.07G092200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021618881.1 | 0.0 | uncharacterized protein LOC110619658 | ||||
TrEMBL | A0A2C9VJV0 | 0.0 | A0A2C9VJV0_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_006212m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4062 | 32 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10030.1 | 1e-158 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.07G092200.1.p |