PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.07G082100.3.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family B3
Protein Properties Length: 381aa    MW: 43113.9 Da    PI: 4.888
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.07G082100.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.44.7e-1718108199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f k+l++s+v+   ++ lp +f++ h  +k  ++ + le+e+g+++ +++     s+r+ l++GWk F+ a++L egD++vF+l++    
  Manes.07G082100.3.p  18 FAKALVRSNVTVGFWMHLPMRFCKLHL-PK-HDTSVFLETENGEEYVINY----ISERTALSGGWKAFCAAHELHEGDVLVFHLVKP--L 99 
                          889********************8884.33.4568***************....566677***********************9874..4 PP

                          ..EEEEE-S CS
                   B3  91 elvvkvfrk 99 
                          +++v ++r+
  Manes.07G082100.3.p 100 KFKVYIVRA 108
                          458888775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-2012109IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-2312108IPR015300DNA-binding pseudobarrel domain
CDDcd100173.13E-2516107No hitNo description
PROSITE profilePS5086313.3818109IPR003340B3 DNA binding domain
PfamPF023621.3E-1518108IPR003340B3 DNA binding domain
SMARTSM010193.1E-1718109IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MERAEEILGS LEASLPSFAK ALVRSNVTVG FWMHLPMRFC KLHLPKHDTS VFLETENGEE  60
YVINYISERT ALSGGWKAFC AAHELHEGDV LVFHLVKPLK FKVYIVRATV SAKANGKLDI  120
QKVDTPEKQI TTENQAEEDI QEHKKRKHLE LPPADLQNNN QEKSLMVLNE EPIATKTEND  180
TEDHSLKTSE VVTSSGSAVD FKDVGSIESF SILINGLALE SELSYQQRTK YYELCCSQGS  240
FLHDNLLKSI NYKLAAEIII ETVNISEAIK ASNLTSSLAD FAVWDKTLKG FELLGMSVGF  300
LRSRLSRLMN LAAESEQAVE SECREYRLEQ ARIDDEMRSL ESKLMELKEE RERLDAEIEA  360
LKVNAERHER MFQEAVNAPW *
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.07G082100.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021618902.10.0B3 domain-containing protein Os01g0234100-like
TrEMBLA0A251KHC80.0A0A251KHC8_MANES; Uncharacterized protein
TrEMBLA0A2C9VJP00.0A0A2C9VJP0_MANES; Uncharacterized protein
STRINGcassava4.1_006729m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-31B3 family protein