PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.07G082100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family B3
Protein Properties Length: 478aa    MW: 53562.3 Da    PI: 5.1681
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.07G082100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.96.9e-17115205199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f k+l++s+v+   ++ lp +f++ h  +k  ++ + le+e+g+++ +++     s+r+ l++GWk F+ a++L egD++vF+l++    
  Manes.07G082100.1.p 115 FAKALVRSNVTVGFWMHLPMRFCKLHL-PK-HDTSVFLETENGEEYVINY----ISERTALSGGWKAFCAAHELHEGDVLVFHLVKP--L 196
                          889********************8884.33.4568***************....566677***********************9874..4 PP

                          ..EEEEE-S CS
                   B3  91 elvvkvfrk 99 
                          +++v ++r+
  Manes.07G082100.1.p 197 KFKVYIVRA 205
                          458888775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.51E-23109205IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-20109206IPR015300DNA-binding pseudobarrel domain
CDDcd100179.75E-25113204No hitNo description
PROSITE profilePS5086313.38115206IPR003340B3 DNA binding domain
PfamPF023621.9E-15115205IPR003340B3 DNA binding domain
SMARTSM010193.1E-17115206IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MDAREEEGAT TPAPAAASAS ESSPLSTQST IYSYPRTKKR KSRGSKAKLT QIHEESPEPN  60
SGTELGLCDK FSKSTSYKQK RAVVNDFYDG SESKSSAMER AEEILGSLEA SLPSFAKALV  120
RSNVTVGFWM HLPMRFCKLH LPKHDTSVFL ETENGEEYVI NYISERTALS GGWKAFCAAH  180
ELHEGDVLVF HLVKPLKFKV YIVRATVSAK ANGKLDIQKV DTPEKQITTE NQAEEDIQEH  240
KKRKHLELPP ADLQNNNQEK SLMVLNEEPI ATKTENDTED HSLKTSEVVT SSGSAVDFKD  300
VGSIESFSIL INGLALESEL SYQQRTKYYE LCCSQGSFLH DNLLKSINYK LAAEIIIETV  360
NISEAIKASN LTSSLADFAV WDKTLKGFEL LGMSVGFLRS RLSRLMNLAA ESEQAVESEC  420
REYRLEQARI DDEMRSLESK LMELKEERER LDAEIEALKV NAERHERMFQ EAVNAPW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.07G082100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021618902.10.0B3 domain-containing protein Os01g0234100-like
TrEMBLA0A2C9VJP00.0A0A2C9VJP0_MANES; Uncharacterized protein
STRINGcassava4.1_006729m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.17e-33B3 family protein