PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.07G059900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family Nin-like
Protein Properties Length: 913aa    MW: 103443 Da    PI: 5.7988
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.07G059900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK901.8e-28606656252
               RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                          ek+i+l+ l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++
  Manes.07G059900.1.p 606 EKTITLQILRQYFAGSLKDAAKSIGVCPTTLKRICRQHGINRWPSRKIKKV 656
                          799**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.847595676IPR003035RWP-RK domain
PfamPF020425.9E-25608656IPR003035RWP-RK domain
SuperFamilySSF542776.21E-21810898No hitNo description
PROSITE profilePS5174523.7814897IPR000270PB1 domain
SMARTSM006662.0E-22814897IPR000270PB1 domain
CDDcd064072.23E-37815896No hitNo description
Gene3DG3DSA:3.10.20.2402.7E-22815895No hitNo description
PfamPF005643.4E-15815896IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 913 aa     Download sequence    Send to blast
MDHGASALNS TVWTFSSTTM DLDVMDKPLS QGYCLENNDR ANSLEPEPFT SHVLYDHSEY  60
SSFSEDLYHQ IYRKEMKPLF ENIPSAYHGI EGAETAKSFV QSESFTLEGS NSGSRWLIDP  120
SYSVKQRLML AIKYLKEYVE DSDVLIQIWV PTQIGGQNVL TTIDQPYSLN PSCKSLASYR  180
NVSKTFQLTA EENLKELAGL PGRVFLGKLP EWTPDVRFFR SDECPRKSYA KMYNISGCLA  240
LPVFEQDNGV CLAVVEIVTT TQKISYSLEL EIVGRALEAV DLKSSQDFFP LGIKACNESY  300
QISILEISDI LQFVCKTHGL PLAMTWALRD RQGEVEHWQF SKKYDYCLST VDSACYVADS  360
DLLGFHEACS EHYLFPNQGI VGKAFTTKKQ WFATDITSFS KANYPLSHHA RMFNLRAALA  420
VPLCNIYTGL IEFVLELFFP WDCKDIEEQK HFWDMLSIVM QQACKSFHVI VDKEIDEEVS  480
EQMVVASDGR YNREGIQELV ASPSNESSQE ESSSTPHEMD SQNKDKFSFI SWECPKEELE  540
DEFKVITHWE NDEMGLYQEP VFSDFQKATQ SSMPKPGVDI AENFSNGRHC SSSSEKASDK  600
RQTKIEKTIT LQILRQYFAG SLKDAAKSIG VCPTTLKRIC RQHGINRWPS RKIKKVDHSL  660
RKLQLIVNSI HGAEGLIQID SFYKSFPELS SSKFSGNDPF SSSRMSENSC ILKPQPRSRL  720
FSPKGKVPKS RSSSCSQNSG STDEEKRLTT INGLNTGCSL AIDDPVLMLK KAYSKPELHN  780
LNQEEKEPKV LKSSLSHKTL HGNTTGHSLQ DGMVFRVKAT FGEENIRFSF LPNWDFRDLQ  840
QEIAKRFKID DFSRIDLKYL DIDQEPVLLT CDADLEECID LLRLSQCNTI KISLHQASKS  900
NLGSSFRIKG LF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.07G059900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021619119.10.0protein NLP3-like
RefseqXP_021619120.10.0protein NLP3-like
TrEMBLA0A2C9VIX10.0A0A2C9VIX1_MANES; Uncharacterized protein
STRINGcassava4.1_001997m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12373399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35270.10.0Nin-like family protein